RNA–Protein interactions for RNA: ENST00000225742.13

SMARCD2-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 1 (best) BASIC

Gene SMARCD2, Length 1,800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-201ENST00000225742 LINC00116Q8NCU8 138 aa25.23■■□□□ 1.63
SMARCD2-201ENST00000225742 IQSEC3Q9UPP2 1182 aaPredicted RBP25.23■■□□□ 1.63
SMARCD2-201ENST00000225742 PSDA5PKW4 1024 aaPredicted RBP25.22■■□□□ 1.63
SMARCD2-201ENST00000225742 BMP15O95972 392 aa25.22■■□□□ 1.63
SMARCD2-201ENST00000225742 IQCA1Q86XH1 822 aa25.22■■□□□ 1.63
SMARCD2-201ENST00000225742 CCDC94Q9BW85 323 aaPredicted RBP25.22■■□□□ 1.63
SMARCD2-201ENST00000225742 ANKRD2Q9GZV1 360 aa25.22■■□□□ 1.63
SMARCD2-201ENST00000225742 HSD3B7Q9H2F3 369 aa25.22■■□□□ 1.63
SMARCD2-201ENST00000225742 PCDHA5Q9Y5H7 936 aa25.22■■□□□ 1.63
SMARCD2-201ENST00000225742 DDAH1O94760 285 aa25.21■■□□□ 1.63
SMARCD2-201ENST00000225742 NT5C2P49902 561 aa25.21■■□□□ 1.63
SMARCD2-201ENST00000225742 C3orf67Q6ZVT6 689 aa25.21■■□□□ 1.63
SMARCD2-201ENST00000225742 ENAHQ8N8S7 591 aaPredicted RBP25.21■■□□□ 1.63
SMARCD2-201ENST00000225742 TSC1Q92574 1164 aa25.21■■□□□ 1.63
SMARCD2-201ENST00000225742 CCDC34Q96HJ3 373 aa25.21■■□□□ 1.63
SMARCD2-201ENST00000225742 LMOD1P29536 600 aaPredicted RBP25.21■■□□□ 1.63
SMARCD2-201ENST00000225742 RC3H1Q5TC82 1133 aaKnown RBP25.21■■□□□ 1.63
SMARCD2-201ENST00000225742 CCP110O43303 1012 aa25.2■■□□□ 1.62
SMARCD2-201ENST00000225742 ORC4O43929 436 aa25.2■■□□□ 1.62
SMARCD2-201ENST00000225742 POSTNQ15063 836 aa25.2■■□□□ 1.62
SMARCD2-201ENST00000225742 IFIT1BQ5T764 474 aaKnown RBP25.2■■□□□ 1.62
SMARCD2-201ENST00000225742 ARMCX5Q6P1M9 558 aa25.2■■□□□ 1.62
SMARCD2-201ENST00000225742 MLKLQ8NB16 471 aa25.2■■□□□ 1.62
SMARCD2-201ENST00000225742 MAST2Q6P0Q8 1798 aa25.2■■□□□ 1.62
SMARCD2-201ENST00000225742 COL24A1Q17RW2 1714 aa25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 GTF2E1P29083 439 aaPredicted RBP25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 FUT2Q10981 343 aa25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 CT47A1Q5JQC4 288 aaPredicted RBP25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 FOXP4Q8IVH2 680 aaPredicted RBP25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 PHF20Q9BVI0 1012 aa25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 TAOK2Q9UL54 1235 aa25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 MYH2Q9UKX2 1941 aa25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 MYH13Q9UKX3 1938 aa25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 KCNQ2O43526 872 aa25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 KRT2P35908 639 aa25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 SARSP49591 514 aaKnown RBP25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 UBASH3AP57075 661 aa25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 PCDHB6Q9Y5E3 794 aa25.19■■□□□ 1.62
SMARCD2-201ENST00000225742 TRIM75PA6NK02 468 aa25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 USP27XA6NNY8 438 aa25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 SERPINC1P01008 464 aa25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 RPS8P62241 208 aaKnown RBP25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 DYNLL1P63167 89 aaKnown RBP25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 NR5A1Q13285 461 aa25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 ISM2Q6H9L7 571 aa25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 CTR9Q6PD62 1173 aa25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 BRMS1Q9HCU9 246 aa25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 AATFQ9NY61 560 aaKnown RBP eCLIP25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 NARFQ9UHQ1 456 aa25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 LAMB1P07942 1786 aa25.18■■□□□ 1.62
SMARCD2-201ENST00000225742 BAZ2AQ9UIF9 1905 aaKnown RBP25.17■■□□□ 1.62
SMARCD2-201ENST00000225742 PKN1Q16512 942 aa25.17■■□□□ 1.62
SMARCD2-201ENST00000225742 CCDC82Q8N4S0 544 aa25.17■■□□□ 1.62
SMARCD2-201ENST00000225742 CELF1Q92879 486 aaKnown RBP25.17■■□□□ 1.62
SMARCD2-201ENST00000225742 NSUN4Q96CB9 384 aaKnown RBP25.17■■□□□ 1.62
SMARCD2-201ENST00000225742 NLRP3Q96P20 1036 aa25.17■■□□□ 1.62
SMARCD2-201ENST00000225742 CRNKL1Q9BZJ0 848 aaKnown RBP25.17■■□□□ 1.62
SMARCD2-201ENST00000225742 ATP8A2Q9NTI2 1148 aa25.17■■□□□ 1.62
SMARCD2-201ENST00000225742 MAN1B1Q9UKM7 699 aa25.17■■□□□ 1.62
SMARCD2-201ENST00000225742 KIF18AQ8NI77 898 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 SMARCE1Q969G3 411 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 CABP5Q9NP86 173 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 TAF1P21675 1872 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 LTBP4Q8N2S1 1624 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 POLR2DO15514 142 aaKnown RBP25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 MORC3Q14149 939 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 SBK1Q52WX2 424 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 TBC1D9BQ66K14 1250 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 VSTM4Q8IW00 320 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 CMTR1Q8N1G2 835 aaKnown RBP25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 PDCL2Q8N4E4 241 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 OXER1Q8TDS5 423 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 FERMT2Q96AC1 680 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 SERTAD1Q9UHV2 236 aa25.16■■□□□ 1.62
SMARCD2-201ENST00000225742 ATP1A3P13637 1013 aa25.15■■□□□ 1.62
SMARCD2-201ENST00000225742 HIBADHP31937 336 aaKnown RBP25.15■■□□□ 1.62
SMARCD2-201ENST00000225742 TROAPQ12815 778 aa25.15■■□□□ 1.62
SMARCD2-201ENST00000225742 TMTC3Q6ZXV5 915 aa25.15■■□□□ 1.62
SMARCD2-201ENST00000225742 ENOX1Q8TC92 643 aaKnown RBP25.15■■□□□ 1.62
SMARCD2-201ENST00000225742 ZNF384Q8TF68 577 aa25.15■■□□□ 1.62
SMARCD2-201ENST00000225742 ACTN4O43707 911 aaKnown RBP25.14■■□□□ 1.62
SMARCD2-201ENST00000225742 RPS6KA4O75676 772 aa25.14■■□□□ 1.62
SMARCD2-201ENST00000225742 E4F1Q66K89 784 aaPredicted RBP25.14■■□□□ 1.62
SMARCD2-201ENST00000225742 KIAA1551Q9HCM1 1747 aa25.14■■□□□ 1.62
SMARCD2-201ENST00000225742 SPATA20Q8TB22 786 aa25.14■■□□□ 1.61
SMARCD2-201ENST00000225742 SETDB2Q96T68 719 aa25.14■■□□□ 1.61
SMARCD2-201ENST00000225742 FANCLQ9NW38 375 aa25.14■■□□□ 1.61
SMARCD2-201ENST00000225742 ARPP21Q9UBL0 812 aaPredicted RBP25.14■■□□□ 1.61
SMARCD2-201ENST00000225742 CCDC88AQ3V6T2 1871 aa25.14■■□□□ 1.61
SMARCD2-201ENST00000225742 NUTM2BA6NNL0 878 aaPredicted RBP25.13■■□□□ 1.61
SMARCD2-201ENST00000225742 NUTM2EB1AL46 878 aaPredicted RBP25.13■■□□□ 1.61
SMARCD2-201ENST00000225742 USP17L12C9JPN9 530 aa25.13■■□□□ 1.61
SMARCD2-201ENST00000225742 USP17L21D6R901 530 aa25.13■■□□□ 1.61
SMARCD2-201ENST00000225742 BMP6P22004 513 aa25.13■■□□□ 1.61
SMARCD2-201ENST00000225742 MECOMQ03112 1051 aa25.13■■□□□ 1.61
SMARCD2-201ENST00000225742 GRIN1Q05586 938 aa25.13■■□□□ 1.61
SMARCD2-201ENST00000225742 NCBP1Q09161 790 aaKnown RBP25.13■■□□□ 1.61
SMARCD2-201ENST00000225742 CFAP100Q494V2 611 aa25.13■■□□□ 1.61
SMARCD2-201ENST00000225742 SPTY2D1Q68D10 685 aaPredicted RBP25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms