RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 TMED1Q13445 227 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 JARID2Q92833 1246 aaPredicted RBP11.6□□□□□ -0.55
VCL-201ENST00000211998 HINFPQ9BQA5 517 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 TAB2Q9NYJ8 693 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 TSKSQ9UJT2 592 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 PEG3Q9GZU2 1588 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 TRPM2O94759 1503 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 IL2RBP14784 551 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 RAPGEF1Q13905 1077 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 TEX2Q8IWB9 1127 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 OGFOD1Q8N543 542 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 CCDC197Q8NCU1 140 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 CDC23Q9UJX2 597 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 ADAM21Q9UKJ8 722 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 ASXL2Q76L83 1435 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 B4DLN1 442 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 CDC25BP30305 580 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 MRPL12P52815 198 aaKnown RBP11.6□□□□□ -0.55
VCL-201ENST00000211998 EIF4A2Q14240 407 aaKnown RBP11.6□□□□□ -0.55
VCL-201ENST00000211998 DDB1Q16531 1140 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 WHAMMQ8TF30 809 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 PRAG1Q86YV5 1406 aa11.6□□□□□ -0.55
VCL-201ENST00000211998 ZWINTO95229 277 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 CALML3P27482 149 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 RANBP1P43487 201 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 CCDC65Q8IXS2 484 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 C8orf58Q8NAV2 365 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 NUP58Q9BVL2 599 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.59□□□□□ -0.55
VCL-201ENST00000211998 CLUL1Q15846 466 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 TRMT44Q8IYL2 757 aaKnown RBP11.59□□□□□ -0.55
VCL-201ENST00000211998 YIPF3Q9GZM5 350 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 SCOCQ9UIL1 159 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 NIP7Q9Y221 180 aaKnown RBP eCLIP11.59□□□□□ -0.55
VCL-201ENST00000211998 MAP3K5Q99683 1374 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 CCDC151A5D8V7 595 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 ERCC5P28715 1186 aaPredicted RBP11.59□□□□□ -0.55
VCL-201ENST00000211998 TEX11Q8IYF3 940 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 ACTR5Q9H9F9 607 aaPredicted RBP11.59□□□□□ -0.55
VCL-201ENST00000211998 PAG1Q9NWQ8 432 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 PHLPP2Q6ZVD8 1323 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 ZBTB7BO15156 539 aaPredicted RBP11.59□□□□□ -0.55
VCL-201ENST00000211998 CREB3O43889 395 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 APBA1Q02410 837 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 BEND3Q5T5X7 828 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 SLC9C2Q5TAH2 1124 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 NUCKS1Q9H1E3 243 aaKnown RBP11.59□□□□□ -0.55
VCL-201ENST00000211998 C6orf50Q9HD87 102 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 MAPK8IP1Q9UQF2 711 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 MAGEB6P1A0A0J9YX57 407 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 POLR2DO15514 142 aaKnown RBP11.59□□□□□ -0.55
VCL-201ENST00000211998 CXorf56Q9H5V9 222 aa11.59□□□□□ -0.55
VCL-201ENST00000211998 MORC2Q9Y6X9 1032 aaPredicted RBP11.59□□□□□ -0.55
VCL-201ENST00000211998 CCDC51Q96ER9 411 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 PLIN2Q99541 437 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 ANKRD2Q9GZV1 360 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 NPATQ14207 1427 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 SYCP2Q9BX26 1530 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 HSP90AA5PQ58FG0 334 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 TPTE2Q6XPS3 522 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 ARMC2Q8NEN0 867 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 PIK3R5Q8WYR1 880 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 SH3GL3Q99963 347 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 HOMER3Q9NSC5 361 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 KRT2P35908 639 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 RPS6KA1Q15418 735 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 HEATR3Q7Z4Q2 680 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 DZIP3Q86Y13 1208 aaKnown RBP11.58□□□□□ -0.56
VCL-201ENST00000211998 ABCC1P33527 1531 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 WDR7Q9Y4E6 1490 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 RNF113AO15541 343 aaKnown RBP11.58□□□□□ -0.56
VCL-201ENST00000211998 PAK1Q13153 545 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 SLC9C1Q4G0N8 1177 aa11.58□□□□□ -0.56
VCL-201ENST00000211998 HIBCHQ6NVY1 386 aaPredicted RBP11.58□□□□□ -0.56
VCL-201ENST00000211998 TDRD7Q8NHU6 1098 aaKnown RBP11.58□□□□□ -0.56
VCL-201ENST00000211998 ATP10BO94823 1461 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 NAPAP54920 295 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 IRX4P78413 519 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 GPIHBP1Q8IV16 184 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 FAM212AQ96EL1 285 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 DCAF5Q96JK2 942 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 KIAA1468Q9P260 1216 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 VWA3AA6NCI4 1184 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 KRT15P19012 456 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 PSMD1Q99460 953 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 LLPHQ9BRT6 129 aaKnown RBP11.57□□□□□ -0.56
VCL-201ENST00000211998 IFIH1Q9BYX4 1025 aaKnown RBP11.57□□□□□ -0.56
VCL-201ENST00000211998 ABCC10Q5T3U5 1492 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 TROVE2P10155 538 aaKnown RBP eCLIP11.57□□□□□ -0.56
VCL-201ENST00000211998 RXRAP19793 462 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 SLC39A6Q13433 755 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 SMC1BQ8NDV3 1235 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 KLHDC4Q8TBB5 520 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 SYNCQ9H7C4 482 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 FAM169AQ9Y6X4 670 aa11.57□□□□□ -0.56
VCL-201ENST00000211998 ARHGAP42A6NI28 874 aa11.56□□□□□ -0.56
VCL-201ENST00000211998 SLC27A2O14975 620 aa11.56□□□□□ -0.56
VCL-201ENST00000211998 CUTAO60888 179 aa11.56□□□□□ -0.56
VCL-201ENST00000211998 FCHSD1Q86WN1 690 aa11.56□□□□□ -0.56
VCL-201ENST00000211998 TRIM58Q8NG06 486 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms