RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 ALAS1P13196 640 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 EZRP15311 586 aaKnown RBP11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 USP14P54578 494 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 PRPF4BQ13523 1007 aaKnown RBP11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 CALCRLQ16602 461 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 PHKBQ93100 1093 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 SSH2Q76I76 1423 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 PTPRMP28827 1452 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 A0A0D9SFI3 127 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 DDX39AO00148 427 aaKnown RBP11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 RAD17O75943 681 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 KRT40Q6A162 431 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 CNNM4Q6P4Q7 775 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 AOPEPQ8N6M6 819 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 LRRC45Q96CN5 670 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 DNM3Q9UQ16 869 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 SMCO2A6NFE2 343 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 PRPHP41219 470 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 CCNA1P78396 465 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 TXNRD1Q16881 649 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 MAP9Q49MG5 647 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 ARHGEF16Q5VV41 709 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 SLFN13Q68D06 897 aa11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 DBNLQ9UJU6 430 aaKnown RBP11.65□□□□□ -0.54
NIPAL3-201ENST00000003912 FLOT1O75955 427 aa11.65□□□□□ -0.55
NIPAL3-201ENST00000003912 EPB41P11171 864 aaKnown RBP11.65□□□□□ -0.55
NIPAL3-201ENST00000003912 NEK11Q8NG66 645 aa11.65□□□□□ -0.55
NIPAL3-201ENST00000003912 SNX29Q8TEQ0 813 aa11.65□□□□□ -0.55
NIPAL3-201ENST00000003912 DHX36Q9H2U1 1008 aaKnown RBP11.65□□□□□ -0.55
NIPAL3-201ENST00000003912 BRPF3Q9ULD4 1205 aa11.65□□□□□ -0.55
NIPAL3-201ENST00000003912 DDAH1O94760 285 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 CARMIL3Q8ND23 1372 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 GCOM1H8Y6P7 765 aaPredicted RBP11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 CUTAO60888 179 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 POLR2MP0CAP2 368 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 FAM193AP78312 1265 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 ZNF274Q96GC6 653 aaPredicted RBP11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 TNKSO95271 1327 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 KDM2BQ8NHM5 1336 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 CROCC2H7BZ55 1655 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 PPM1FP49593 454 aaPredicted RBP11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 FAM160A1Q05DH4 1040 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 FBXO11Q86XK2 927 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 LRRC47Q8N1G4 583 aaKnown RBP11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 ANKRD35Q8N283 1001 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 TRIM6Q9C030 488 aaPredicted RBP11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 DNAJC25Q9H1X3 360 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 MED23Q9ULK4 1368 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 FGAP02671 866 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 HARSP12081 509 aaKnown RBP11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 WDR44Q5JSH3 913 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 GINS2Q9Y248 185 aa11.64□□□□□ -0.55
NIPAL3-201ENST00000003912 OSBPP22059 807 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 PDE4DQ08499 809 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 HSP90AA4PQ58FG1 418 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 DPH6Q7L8W6 267 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 TRMT2AQ8IZ69 625 aaKnown RBP11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 CRACR2AQ9BSW2 395 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 PSTPIP2Q9H939 334 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 ARHGEF40Q8TER5 1519 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 H7C1W4 665 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 BIRC3Q13489 604 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 TTLL11Q8NHH1 800 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 MLXIPQ9HAP2 919 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 LAMC1P11047 1609 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 KLRF2D3W0D1 207 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 TRAF5O00463 557 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 C21orf2O43822 256 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 NCAPG2Q86XI2 1143 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 KCNH3Q9ULD8 1083 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 CALUO43852 315 aaPredicted RBP11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 STX17P56962 302 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 OTUD6AQ7L8S5 288 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 FNBP4Q8N3X1 1017 aaPredicted RBP11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 FANCBQ8NB91 859 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 GLG1Q92896 1179 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 SEC62Q99442 399 aaKnown RBP11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 TRMT1Q9NXH9 659 aaKnown RBP11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 FRMPD2Q68DX3 1309 aaPredicted RBP11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 GAS7O60861 476 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 CYP19A1P11511 503 aaPredicted RBP11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 GALNT17Q6IS24 598 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 VPS54Q9P1Q0 977 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 STAP2Q9UGK3 403 aa11.63□□□□□ -0.55
NIPAL3-201ENST00000003912 TRPM1Q7Z4N2 1603 aa11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 TMEM232C9JQI7 657 aa11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 TYRO3Q06418 890 aa11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 ZMYM1Q5SVZ6 1142 aa11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 ARHGEF1Q92888 912 aaKnown RBP11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 CWC15Q9P013 229 aaKnown RBP11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 SETBP1Q9Y6X0 1596 aa11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 A0A1B0GVL5 298 aa11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 IREB2P48200 963 aaKnown RBP11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 UBXN1Q04323 297 aa11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 HLFQ16534 295 aa11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 DCAF17Q5H9S7 520 aaPredicted RBP11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 GPATCH4Q5T3I0 446 aaKnown RBP11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 TAF3Q5VWG9 929 aa11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 CEP135Q66GS9 1140 aa11.62□□□□□ -0.55
NIPAL3-201ENST00000003912 MYO3BQ8WXR4 1341 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms