RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 H2al1eQ810S6 105 aa8.63□□□□□ -1.03
Nup88-201ENSMUST00000035283 H2al1mQ9DAD9 105 aa8.63□□□□□ -1.03
Nup88-201ENSMUST00000035283 Dnah3Q8BW94 4083 aa8.63□□□□□ -1.03
Nup88-201ENSMUST00000035283 VwfQ8CIZ8 2813 aa8.62□□□□□ -1.03
Nup88-201ENSMUST00000035283 Sprr1aQ62266 144 aa8.62□□□□□ -1.03
Nup88-201ENSMUST00000035283 HrnrQ8VHD8 2496 aa8.62□□□□□ -1.03
Nup88-201ENSMUST00000035283 Igkv3-12A0A140T8P0 119 aa8.61□□□□□ -1.03
Nup88-201ENSMUST00000035283 Wfdc6bF6ULY1 148 aa8.61□□□□□ -1.03
Nup88-201ENSMUST00000035283 1700018G05RikA0A1B0GSI2 66 aa8.61□□□□□ -1.03
Nup88-201ENSMUST00000035283 Nsd1O88491 2588 aaKnown RBP8.61□□□□□ -1.03
Nup88-201ENSMUST00000035283 Obox2E9PXV9 151 aa8.6□□□□□ -1.03
Nup88-201ENSMUST00000035283 Gm11627A6PWP4 55 aa8.6□□□□□ -1.03
Nup88-201ENSMUST00000035283 Gm10197F6QEY5 67 aa8.59□□□□□ -1.03
Nup88-201ENSMUST00000035283 Spint4Q9D263 159 aa8.59□□□□□ -1.03
Nup88-201ENSMUST00000035283 TgO08710 2766 aa8.58□□□□□ -1.04
Nup88-201ENSMUST00000035283 Ube2bP63147 152 aa8.58□□□□□ -1.04
Nup88-201ENSMUST00000035283 Cdc42se1Q8BHL7 80 aa8.58□□□□□ -1.04
Nup88-201ENSMUST00000035283 Bean1Q9EQG5 255 aa8.58□□□□□ -1.04
Nup88-201ENSMUST00000035283 Gm37013Q8K491 104 aa8.57□□□□□ -1.04
Nup88-201ENSMUST00000035283 Gm21886J3QJU9 214 aa8.56□□□□□ -1.04
Nup88-201ENSMUST00000035283 Dnah10D3YYQ8 4591 aa8.56□□□□□ -1.04
Nup88-201ENSMUST00000035283 Gm16181B0V2H2 73 aa8.55□□□□□ -1.04
Nup88-201ENSMUST00000035283 Prol1E9PYQ4 312 aa8.55□□□□□ -1.04
Nup88-201ENSMUST00000035283 Wfdc13Q5DQQ6 81 aa8.55□□□□□ -1.04
Nup88-201ENSMUST00000035283 Gm7137J3QMW1 236 aa8.54□□□□□ -1.04
Nup88-201ENSMUST00000035283 Coa5Q99M07 74 aa8.54□□□□□ -1.04
Nup88-201ENSMUST00000035283 Reg3aO09037 175 aa8.54□□□□□ -1.04
Nup88-201ENSMUST00000035283 AI606181Q8C7B9 129 aa8.53□□□□□ -1.04
Nup88-201ENSMUST00000035283 Gm28374F6SG70 93 aa8.52□□□□□ -1.05
Nup88-201ENSMUST00000035283 Gm12353A2AGJ4 60 aa8.51□□□□□ -1.05
Nup88-201ENSMUST00000035283 U90926O08546 118 aa8.51□□□□□ -1.05
Nup88-201ENSMUST00000035283 Sslp1Q3UN54 99 aa8.49□□□□□ -1.05
Nup88-201ENSMUST00000035283 Gm36176A0A1W2P8D5 158 aa8.49□□□□□ -1.05
Nup88-201ENSMUST00000035283 Atox1O08997 68 aaKnown RBP8.49□□□□□ -1.05
Nup88-201ENSMUST00000035283 Odf3bQ5M8M2 238 aa8.49□□□□□ -1.05
Nup88-201ENSMUST00000035283 Igkv3-10A0A0G2JGN0 119 aa8.48□□□□□ -1.05
Nup88-201ENSMUST00000035283 Rpl37aP61514 92 aa8.48□□□□□ -1.05
Nup88-201ENSMUST00000035283 Zcchc13Q9D548 170 aa8.47□□□□□ -1.05
Nup88-201ENSMUST00000035283 Dnah1E9Q8T7 4250 aa8.47□□□□□ -1.05
Nup88-201ENSMUST00000035283 Fam104aA2A6P4 185 aa8.47□□□□□ -1.05
Nup88-201ENSMUST00000035283 A0A286YE49 62 aa8.46□□□□□ -1.05
Nup88-201ENSMUST00000035283 1700074P13RikQ9D9G7 251 aa8.46□□□□□ -1.06
Nup88-201ENSMUST00000035283 Gm28230A0A0A0MQ91 144 aa8.45□□□□□ -1.06
Nup88-201ENSMUST00000035283 Dnah14A0A140LIJ4 4489 aa8.45□□□□□ -1.06
Nup88-201ENSMUST00000035283 Fn1P11276 2477 aaKnown RBP8.41□□□□□ -1.06
Nup88-201ENSMUST00000035283 B9d2Q3UK10 175 aa8.41□□□□□ -1.06
Nup88-201ENSMUST00000035283 Megf8P60882 2789 aa8.4□□□□□ -1.06
Nup88-201ENSMUST00000035283 Gm10139O88245 57 aa8.4□□□□□ -1.07
Nup88-201ENSMUST00000035283 Igkv3-7A0A0G2JE31 119 aa8.39□□□□□ -1.07
Nup88-201ENSMUST00000035283 Dnah6E9Q0B6 4144 aa8.38□□□□□ -1.07
Nup88-201ENSMUST00000035283 Ube2aQ9Z255 152 aa8.37□□□□□ -1.07
Nup88-201ENSMUST00000035283 SycnQ8VCK7 134 aa8.37□□□□□ -1.07
Nup88-201ENSMUST00000035283 Dnah17Q69Z23 4481 aa8.36□□□□□ -1.07
Nup88-201ENSMUST00000035283 Chtf8P0CG14 533 aa8.36□□□□□ -1.07
Nup88-201ENSMUST00000035283 Phf5aP83870 110 aaKnown RBP8.35□□□□□ -1.07
Nup88-201ENSMUST00000035283 Muc6Q80T03 2850 aa8.35□□□□□ -1.07
Nup88-201ENSMUST00000035283 FasnP19096 2504 aaKnown RBP8.35□□□□□ -1.07
Nup88-201ENSMUST00000035283 Gm10267M0QWD8 85 aa8.35□□□□□ -1.07
Nup88-201ENSMUST00000035283 Gm9508A0A1W2P7W0 230 aa8.34□□□□□ -1.07
Nup88-201ENSMUST00000035283 Chchd10Q7TNL9 138 aa8.34□□□□□ -1.07
Nup88-201ENSMUST00000035283 4933415A04RikQ9D443 101 aa8.34□□□□□ -1.07
Nup88-201ENSMUST00000035283 Dnah11E9Q7N9 4488 aa8.34□□□□□ -1.07
Nup88-201ENSMUST00000035283 9530053A07RikE9PVG8 2581 aa8.33□□□□□ -1.08
Nup88-201ENSMUST00000035283 Gm2310J3QNJ2 377 aa8.32□□□□□ -1.08
Nup88-201ENSMUST00000035283 Phxr4P15974 95 aa8.32□□□□□ -1.08
Nup88-201ENSMUST00000035283 Tenm2Q9WTS5 2764 aa8.32□□□□□ -1.08
Nup88-201ENSMUST00000035283 Gm10837Q3UTT8 145 aa8.31□□□□□ -1.08
Nup88-201ENSMUST00000035283 2310061N02RikQ9D6S9 174 aa8.3□□□□□ -1.08
Nup88-201ENSMUST00000035283 Stab2Q8R4U0 2559 aa8.3□□□□□ -1.08
Nup88-201ENSMUST00000035283 Wfdc10Q3V2J9 124 aa8.28□□□□□ -1.08
Nup88-201ENSMUST00000035283 Defb38Q7TNV7 63 aa8.28□□□□□ -1.08
Nup88-201ENSMUST00000035283 Dnah9B1AR51 4484 aa8.25□□□□□ -1.09
Nup88-201ENSMUST00000035283 Wfdc17Q5SSJ1 76 aa8.23□□□□□ -1.09
Nup88-201ENSMUST00000035283 Sox16Q62247 57 aa8.23□□□□□ -1.09
Nup88-201ENSMUST00000035283 Defb9Q8R2I6 67 aa8.23□□□□□ -1.09
Nup88-201ENSMUST00000035283 Igsf10Q3V1M1 2594 aa8.23□□□□□ -1.09
Nup88-201ENSMUST00000035283 Igkv3-5A0A140T8M6 119 aa8.22□□□□□ -1.09
Nup88-201ENSMUST00000035283 Gm20604F8WIA3 75 aa8.22□□□□□ -1.09
Nup88-201ENSMUST00000035283 6030445D17RikE9Q8F9 148 aa8.21□□□□□ -1.1
Nup88-201ENSMUST00000035283 Gm10160F6Y577 67 aa8.21□□□□□ -1.1
Nup88-201ENSMUST00000035283 Sec61gP60060 68 aa8.21□□□□□ -1.1
Nup88-201ENSMUST00000035283 Pkd1l1Q8R526 2615 aa8.19□□□□□ -1.1
Nup88-201ENSMUST00000035283 Gm10642Q3TWM1 71 aa8.18□□□□□ -1.1
Nup88-201ENSMUST00000035283 Igkv3-3A0A140T8Q0 119 aa8.15□□□□□ -1.1
Nup88-201ENSMUST00000035283 Gm27235Q3UW50 83 aa8.15□□□□□ -1.1
Nup88-201ENSMUST00000035283 1700012A03RikQ9DAF1 130 aa8.14□□□□□ -1.11
Nup88-201ENSMUST00000035283 Gm20661K7N787 53 aa8.13□□□□□ -1.11
Nup88-201ENSMUST00000035283 Nupr2Q497P3 102 aa8.12□□□□□ -1.11
Nup88-201ENSMUST00000035283 Spata3Q9D9T6 193 aa8.12□□□□□ -1.11
Nup88-201ENSMUST00000035283 Plac8Q9JI48 112 aa8.12□□□□□ -1.11
Nup88-201ENSMUST00000035283 9230102O04RikA2ASX7 82 aa8.11□□□□□ -1.11
Nup88-201ENSMUST00000035283 SptssbQ925E8 76 aa8.1□□□□□ -1.11
Nup88-201ENSMUST00000035283 Anapc11Q9CPX9 84 aa8.1□□□□□ -1.11
Nup88-201ENSMUST00000035283 Dync2h1Q45VK7 4306 aa8.1□□□□□ -1.11
Nup88-201ENSMUST00000035283 Huwe1Q7TMY8 4377 aaKnown RBP8.07□□□□□ -1.12
Nup88-201ENSMUST00000035283 AW011738F6S7Q2 159 aa8.05□□□□□ -1.12
Nup88-201ENSMUST00000035283 Q8K1L6 76 aa8.05□□□□□ -1.12
Nup88-201ENSMUST00000035283 Gm3646F6S692 53 aa8.03□□□□□ -1.12
Nup88-201ENSMUST00000035283 Gm10065F6TJM2 114 aa8.01□□□□□ -1.13
Nup88-201ENSMUST00000035283 Gm21798J3QNU5 87 aa8.01□□□□□ -1.13
Retrieved 100 of 22,080 RNA–protein pairs in 27 ms