RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 Wfdc6bF6ULY1 148 aa13.63□□□□□ -0.23
Ccdc88a-202ENSMUST00000109477 Gm9805F6YK59 57 aa13.63□□□□□ -0.23
Ccdc88a-202ENSMUST00000109477 Krtap10-4Q08EG8 221 aa13.63□□□□□ -0.23
Ccdc88a-202ENSMUST00000109477 Plac8Q9JI48 112 aa13.63□□□□□ -0.23
Ccdc88a-202ENSMUST00000109477 Mrpl52Q9D0Y8 121 aa13.62□□□□□ -0.23
Ccdc88a-202ENSMUST00000109477 SycnQ8VCK7 134 aa13.61□□□□□ -0.23
Ccdc88a-202ENSMUST00000109477 Dnah2P0C6F1 4456 aa13.61□□□□□ -0.23
Ccdc88a-202ENSMUST00000109477 PscaP57096 123 aa13.6□□□□□ -0.23
Ccdc88a-202ENSMUST00000109477 BC048502Q80Y74 154 aa13.59□□□□□ -0.23
Ccdc88a-202ENSMUST00000109477 Spata45Q9CVW4 97 aa13.59□□□□□ -0.23
Ccdc88a-202ENSMUST00000109477 1700012A03RikQ9DAF1 130 aa13.59□□□□□ -0.23
Ccdc88a-202ENSMUST00000109477 Obox2E9PXV9 151 aa13.57□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 Prol1E9PYQ4 312 aa13.57□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 Fam168bQ80XQ8 194 aa13.57□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 Trav3-4A0A075B654 114 aa13.56□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 Gm10770F7D043 238 aa13.56□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 PkigO70139 76 aa13.56□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 Ntn5Q3UQ22 452 aa13.56□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 Fam19a1Q7TPG8 133 aa13.54□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 Igkv1-35A0A0G2JDE5 120 aa13.53□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 Fam19a5Q91WE9 132 aa13.53□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 Pkd1O08852 4293 aa13.53□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 2310034G01RikA0A286YDL3 209 aa13.53□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 Klk12B2RVZ0 247 aa13.53□□□□□ -0.24
Ccdc88a-202ENSMUST00000109477 P84750 121 aa13.51□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Zcchc13Q9D548 170 aa13.51□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Gm28374F6SG70 93 aa13.5□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Defa4P28311 92 aa13.5□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Dmac1Q9CQ00 111 aa13.5□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Rpl39lQ9CQD0 51 aa13.5□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 4930524J08RikQ9CUJ5 163 aa13.49□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Ighv10-1A0A0B4J1J6 119 aa13.48□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Cd164Q9R0L9 197 aa13.48□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 E130218I03RikA0A0U1RNU5 63 aa13.47□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Defa23Q5G866 93 aa13.47□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Smim29Q8R043 75 aa13.47□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Igkv4-58A0A0G2JGI6 119 aa13.46□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Pxt1Q8K459 51 aa13.46□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Xlr5cQ9JJR2 179 aa13.46□□□□□ -0.25
Ccdc88a-202ENSMUST00000109477 Gm10065F6TJM2 114 aa13.45□□□□□ -0.26
Ccdc88a-202ENSMUST00000109477 1700020N15RikL7MTX3 112 aa13.45□□□□□ -0.26
Ccdc88a-202ENSMUST00000109477 Acyp1P56376 99 aa13.45□□□□□ -0.26
Ccdc88a-202ENSMUST00000109477 Gm10320E9PW43 113 aa13.44□□□□□ -0.26
Ccdc88a-202ENSMUST00000109477 Defa27F2Z403 93 aa13.44□□□□□ -0.26
Ccdc88a-202ENSMUST00000109477 Elof1P60003 83 aa13.43□□□□□ -0.26
Ccdc88a-202ENSMUST00000109477 Gm7276Q3TYW4 209 aa13.43□□□□□ -0.26
Ccdc88a-202ENSMUST00000109477 Q9DAA7 145 aa13.42□□□□□ -0.26
Ccdc88a-202ENSMUST00000109477 Vps25Q9CQ80 176 aa13.41□□□□□ -0.26
Ccdc88a-202ENSMUST00000109477 Stard9Q80TF6 4561 aa13.4□□□□□ -0.26
Ccdc88a-202ENSMUST00000109477 Sigmar1O55242 223 aa13.4□□□□□ -0.26
Ccdc88a-202ENSMUST00000109477 Dync1h1Q9JHU4 4644 aaKnown RBP13.4□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 Msrb1Q9JLC3 116 aa13.39□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 Ighv2-2A0A075B5P8 116 aa13.39□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 Ighv2-5A0A0A6YY69 116 aa13.39□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 P01821 116 aa13.39□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 Gm2696A0A1W2P709 240 aa13.38□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 Dnah5Q8VHE6 4621 aa13.37□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 Gm11011D3Z3L9 86 aa13.37□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 Ryr1E9PZQ0 5035 aa13.37□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 Krtap29-1A2A5X4 342 aa13.36□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 TeppQ6IMH0 216 aa13.35□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 Gm10767Q3TQP0 103 aa13.34□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 Znf414Q9DCK4 299 aa13.34□□□□□ -0.27
Ccdc88a-202ENSMUST00000109477 Igkv2-109A0A075B5K6 120 aa13.33□□□□□ -0.28
Ccdc88a-202ENSMUST00000109477 Fam104aA2A6P4 185 aa13.33□□□□□ -0.28
Ccdc88a-202ENSMUST00000109477 Phf5aP83870 110 aaKnown RBP13.33□□□□□ -0.28
Ccdc88a-202ENSMUST00000109477 Defb9Q8R2I6 67 aa13.32□□□□□ -0.28
Ccdc88a-202ENSMUST00000109477 5730596B20RikQ8BQ08 205 aa13.31□□□□□ -0.28
Ccdc88a-202ENSMUST00000109477 Ube2bP63147 152 aa13.3□□□□□ -0.28
Ccdc88a-202ENSMUST00000109477 Gtf2h5Q8K2X8 71 aa13.29□□□□□ -0.28
Ccdc88a-202ENSMUST00000109477 Igkv1-122A0A140T8M9 119 aa13.27□□□□□ -0.29
Ccdc88a-202ENSMUST00000109477 Gm45213A0A0U1RNZ6 101 aa13.26□□□□□ -0.29
Ccdc88a-202ENSMUST00000109477 Wfdc10Q3V2J9 124 aa13.26□□□□□ -0.29
Ccdc88a-202ENSMUST00000109477 Fat1A0A1L1SQU7 4645 aa13.25□□□□□ -0.29
Ccdc88a-202ENSMUST00000109477 Defb37Q7TMD2 62 aa13.24□□□□□ -0.29
Ccdc88a-202ENSMUST00000109477 Gm7102J3QQ10 178 aa13.23□□□□□ -0.29
Ccdc88a-202ENSMUST00000109477 1600014C23RikQ9DAX4 101 aa13.23□□□□□ -0.29
Ccdc88a-202ENSMUST00000109477 Gm17521F6QAC8 156 aa13.22□□□□□ -0.29
Ccdc88a-202ENSMUST00000109477 LbhQ9CX60 105 aa13.22□□□□□ -0.29
Ccdc88a-202ENSMUST00000109477 Gpr15lA0A0B4J1N3 78 aa13.22□□□□□ -0.29
Ccdc88a-202ENSMUST00000109477 Tmem243B2RVB9 118 aa13.22□□□□□ -0.29
Ccdc88a-202ENSMUST00000109477 Ifitm6A0A1B0GS75 124 aa13.21□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 Defa7P50705 93 aa13.21□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 Cited1P97769 203 aa13.21□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 A930002H24RikQ8C8Y3 163 aa13.21□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 Igkv8-26A0A075B5N5 123 aa13.2□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 9530003J23RikQ8BM26 151 aa13.2□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 Fam240bJ3QMB3 78 aa13.19□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 Krtap13O88375 197 aa13.19□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 SacsQ9JLC8 4582 aa13.18□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 Pkhd1E9PZ36 4059 aa13.18□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 6030445D17RikE9Q8F9 148 aa13.17□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 Lamtor3O88653 124 aa13.17□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 Ighv10-3A0A075B5T6 119 aa13.16□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 Xcl1P47993 114 aa13.15□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 Q8K1L6 76 aa13.15□□□□□ -0.3
Ccdc88a-202ENSMUST00000109477 A0A286YE02 88 aa13.13□□□□□ -0.31
Ccdc88a-202ENSMUST00000109477 NbdyA0A0N4SUI7 68 aa13.13□□□□□ -0.31
Ccdc88a-202ENSMUST00000109477 AI606181Q8C7B9 129 aa13.13□□□□□ -0.31
Ccdc88a-202ENSMUST00000109477 Adm2Q7TNK8 150 aa13.12□□□□□ -0.31
Retrieved 100 of 22,080 RNA–protein pairs in 37.8 ms