RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	CDC10	P25342	322 aa	Known RBP	6.24	□□□□□ -1.41
RPN11	YFR004W	YME1	P32795	747 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	SWE1	P32944	819 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	DUT1	P33317	147 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	LOS1	P33418	1100 aa	Predicted RBP	6.24	□□□□□ -1.41
RPN11	YFR004W	RPC37	P36121	282 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	YMR134W	P40207	237 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	SBE2	P42223	864 aa	Known RBP	6.24	□□□□□ -1.41
RPN11	YFR004W	ASN1	P49089	572 aa	Known RBP	6.24	□□□□□ -1.41
RPN11	YFR004W	DRN1	P53255	507 aa	Known RBP	6.24	□□□□□ -1.41
RPN11	YFR004W	RTS3	P53289	263 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	CWC24	P53769	259 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	PPM1	Q04081	328 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	SHS1	Q07657	551 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	6.24	□□□□□ -1.41	not detected
RPN11	YFR004W	MET32	Q12041	191 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	NCA2	Q12374	616 aa		6.24	□□□□□ -1.41
RPN11	YFR004W	CET1	O13297	549 aa	Predicted RBP	6.23	□□□□□ -1.41
RPN11	YFR004W	CDC42	P19073	191 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	SIR1	P21691	654 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	VPS3	P23643	1011 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	RRT12	P25381	491 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	MSH2	P25847	964 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	SLA2	P33338	968 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	MKS1	P34072	584 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	TBS1	P38114	1094 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	YBP1	P38315	674 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	YHR054C	P38780	354 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	MED6	P38782	295 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	DYS1	P38791	387 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	MKT1	P40850	830 aa	Known RBP	6.23	□□□□□ -1.41
RPN11	YFR004W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	6.23	□□□□□ -1.41	not detected
RPN11	YFR004W	SNU56	Q03782	492 aa	Known RBP	6.23	□□□□□ -1.41
RPN11	YFR004W	FAR8	Q05040	523 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	YOR059C	Q08448	450 aa	Known RBP	6.23	□□□□□ -1.41
RPN11	YFR004W	AI5_BETA	Q9ZZX0	354 aa		6.23	□□□□□ -1.41
RPN11	YFR004W	TPK1	P06244	397 aa		6.22	□□□□□ -1.41
RPN11	YFR004W	CMD1	P06787	147 aa	Known RBP	6.22	□□□□□ -1.41
RPN11	YFR004W	GCR1	P07261	785 aa		6.22	□□□□□ -1.41
RPN11	YFR004W	PEP5	P12868	1029 aa		6.22	□□□□□ -1.41
RPN11	YFR004W	MTF1	P14908	341 aa	Known RBP	6.22	□□□□□ -1.41
RPN11	YFR004W	PRP4	P20053	465 aa	Known RBP	6.22	□□□□□ -1.41
RPN11	YFR004W	TSR4	P25040	408 aa		6.22	□□□□□ -1.41
RPN11	YFR004W	SCD5	P34758	872 aa		6.22	□□□□□ -1.41
RPN11	YFR004W	TOM20	P35180	183 aa		6.22	□□□□□ -1.41
RPN11	YFR004W	PHO86	P46956	311 aa		6.22	□□□□□ -1.41
RPN11	YFR004W	VPS25	P47142	202 aa		6.22	□□□□□ -1.41
RPN11	YFR004W	YML6	P51998	286 aa		6.22	□□□□□ -1.41
RPN11	YFR004W	SHR3	Q02774	210 aa		6.22	□□□□□ -1.41
RPN11	YFR004W	ABP140	Q08641	628 aa	Known RBP	6.22	□□□□□ -1.41
RPN11	YFR004W	ECM3	Q99252	613 aa		6.22	□□□□□ -1.41
RPN11	YFR004W	RAD10	P06838	210 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	PMS1	P14242	873 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	CDC34	P14682	295 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	BAS1	P22035	811 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	AEP2	P22136	580 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	MGT1	P26188	188 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	RAD16	P31244	790 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	PDB1	P32473	366 aa	Known RBP	6.21	□□□□□ -1.42
RPN11	YFR004W	HEK2	P38199	381 aa	Known RBP RIP-Chip data	6.21	□□□□□ -1.42	not detected
RPN11	YFR004W	POP4	P38336	279 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	TMN3	P40071	706 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	FTR1	P40088	404 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	KHA1	P40309	873 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	TDA10	P42938	290 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	RGD2	P43556	714 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	UTP8	P53276	713 aa	Known RBP	6.21	□□□□□ -1.42
RPN11	YFR004W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	6.21	□□□□□ -1.42	not detected
RPN11	YFR004W	RPL22B	P56628	122 aa	Known RBP	6.21	□□□□□ -1.42
RPN11	YFR004W	YPL109C	Q02981	657 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	HOT1	Q03213	719 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	TIF35	Q04067	274 aa	Known RBP	6.21	□□□□□ -1.42
RPN11	YFR004W	IVY1	Q04934	453 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	BSC2	Q05611	235 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	EAF1	Q06337	982 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	BSP1	Q06604	576 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	YPQ1	Q12010	308 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	TAF10	Q12030	206 aa		6.21	□□□□□ -1.42
RPN11	YFR004W	RIB2	Q12362	591 aa	Known RBP	6.21	□□□□□ -1.42
RPN11	YFR004W	BI2	P03873	423 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	BI4	P03879	638 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	RPS3	P05750	240 aa	Known RBP	6.2	□□□□□ -1.42
RPN11	YFR004W	ILV2	P07342	687 aa	Known RBP	6.2	□□□□□ -1.42
RPN11	YFR004W	YML002W	P0CF17	737 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	YMR085W	P0CF18	432 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	HEM15	P16622	393 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	GAL11	P19659	1081 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	PPH22	P23595	377 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	PRE9	P23638	258 aa	Known RBP	6.2	□□□□□ -1.42
RPN11	YFR004W	TPS2	P31688	896 aa	Known RBP	6.2	□□□□□ -1.42
RPN11	YFR004W	SIF2	P38262	535 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	SPF1	P39986	1215 aa	Known RBP	6.2	□□□□□ -1.42
RPN11	YFR004W	BTT1	P40314	149 aa	Predicted RBP	6.2	□□□□□ -1.42
RPN11	YFR004W	NTA1	P40354	457 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	ALA1	P40825	983 aa	Known RBP	6.2	□□□□□ -1.42
RPN11	YFR004W	CHS6	P40955	746 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	TMA22	P47089	198 aa	Predicted RBP	6.2	□□□□□ -1.42
RPN11	YFR004W	ALT1	P52893	592 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	YGR053C	P53234	283 aa		6.2	□□□□□ -1.42
RPN11	YFR004W	IMP4	P53941	290 aa	Known RBP	6.2	□□□□□ -1.42

Retrieved 100 of 5,963 RNA–protein pairs in 8.2 ms