RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 GDAP1L1Q96MZ0 367 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 PLCB1Q9NQ66 1216 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 CEP131Q9UPN4 1083 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 HEATR1Q9H583 2144 aaKnown RBP4□□□□□ -1.77
SCN1A-221ENST00000641996 MDC1Q14676 2089 aaKnown RBP4□□□□□ -1.77
SCN1A-221ENST00000641996 XRCC6P12956 609 aaKnown RBP eCLIP4□□□□□ -1.77
SCN1A-221ENST00000641996 IQCB1Q15051 598 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 ANKRD45Q5TZF3 282 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 GRAMD4Q6IC98 578 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 C3orf20Q8ND61 904 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 hCG_1984214I3L0E3 225 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 TROVE2P10155 538 aaKnown RBP eCLIP4□□□□□ -1.77
SCN1A-221ENST00000641996 SLC43A3Q8NBI5 491 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 SCG3Q8WXD2 468 aaKnown RBP4□□□□□ -1.77
SCN1A-221ENST00000641996 SRPK1Q96SB4 655 aaKnown RBP4□□□□□ -1.77
SCN1A-221ENST00000641996 SPZ1Q9BXG8 430 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 PTPRHQ9HD43 1115 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 TRIP11Q15643 1979 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 SMIM24O75264 130 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 GMNNO75496 209 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 MYZAPP0CAP1 466 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 GRAMD1BQ3KR37 738 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 TEX19Q8NA77 164 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 EIF2AK3Q9NZJ5 1116 aaKnown RBP4□□□□□ -1.77
SCN1A-221ENST00000641996 PDE6CP51160 858 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 CDC26Q8NHZ8 85 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 SAAL1Q96ER3 474 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 VCX3BQ9H321 246 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 EID1Q9Y6B2 187 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 TCHHQ07283 1943 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 ARHGAP22Q7Z5H3 698 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4□□□□□ -1.77
SCN1A-221ENST00000641996 FAM76AQ8TAV0 307 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 IER2Q9BTL4 223 aa4□□□□□ -1.77
SCN1A-221ENST00000641996 PLEKHG6Q3KR16 790 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 KCTD21Q4G0X4 260 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 KSR1Q8IVT5 923 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 CCDC112Q8NEF3 446 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 LUC7LQ9NQ29 371 aaKnown RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 SPAG17Q6Q759 2223 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ATP8B1O43520 1251 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 CTNNA1P35221 906 aaKnown RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 NEK3P51956 506 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 UBASH3AP57075 661 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 CUL4BQ13620 913 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 NFRKBQ6P4R8 1299 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ARHGAP27Q6ZUM4 889 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 CADPS2Q86UW7 1296 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 KLHDC4Q8TBB5 520 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ZKSCAN3Q9BRR0 538 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 DESI2Q9BSY9 194 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ZCWPW1Q9H0M4 648 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 TRAK1Q9UPV9 953 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 APOEP02649 317 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 PYGBP11216 843 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 USP4Q13107 963 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 NEDD9Q14511 834 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 FNBP4Q8N3X1 1017 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 BAG1Q99933 345 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 SNX6Q9UNH7 406 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 SLC45A1Q9Y2W3 748 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 USP16Q9Y5T5 823 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 MORC2Q9Y6X9 1032 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 P4HA2O15460 535 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 CTCFLQ8NI51 663 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ATPIF1Q9UII2 106 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 SH3BGRL2Q9UJC5 107 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 AKAP2Q9Y2D5 859 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ATXN3P54252 364 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 USHBP1Q8N6Y0 703 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 CEP63Q96MT8 703 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 EFHD1Q9BUP0 239 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 EDEM3Q9BZQ6 932 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ZCCHC6Q5VYS8 1495 aaKnown RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 KIF2AO00139 706 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 PDAP1Q13442 181 aaKnown RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 PLS1Q14651 629 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ELMSAN1Q6PJG2 1045 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 LRRIQ4A6NIV6 560 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 EPB42P16452 691 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 PREPLQ4J6C6 727 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 GOLGA5Q8TBA6 731 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 TSGA10Q9BZW7 698 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 HOMER2Q9NSB8 354 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ATP8A1Q9Y2Q0 1164 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 PCDHGB7Q9Y5F8 929 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 GOLGA8IPA6NC78 632 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 KLHL33A6NCF5 533 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 RASSF10A6NK89 507 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 IFIT1P09914 478 aaKnown RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ZSCAN22P10073 491 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 STIP1P31948 543 aaKnown RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 ITPRIPL1Q6GPH6 555 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 KCNH8Q96L42 1107 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 GSDMAQ96QA5 445 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 SPAG5Q96R06 1193 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-221ENST00000641996 KATNA1O75449 491 aa3.99□□□□□ -1.77
SCN1A-221ENST00000641996 PYGLP06737 847 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms