RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TLR3O15455 904 aaKnown RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ZRANB2O95218 330 aaKnown RBP eCLIP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 DIXDC1Q155Q3 683 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 C16orf62Q7Z3J2 963 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 C2orf69Q8N8R5 385 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC63Q8NA47 563 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 LTV1Q96GA3 475 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ANAPC5Q9UJX4 755 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 NCOR2Q9Y618 2525 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 WASLO00401 505 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 PLIN1O60240 522 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 CEP104O60308 925 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 CES1P23141 567 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 PAFAH1B1P43034 410 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ARMC9Q7Z3E5 817 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 THEGQ9P2T0 379 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 FAF1Q9UNN5 650 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 FAM169AQ9Y6X4 670 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ANKRD30BQ9BXX2 1392 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 IQCA1LA6NCM1 817 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ZNF233A6NK53 670 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 LRRIQ3A6PVS8 624 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 HMOX1P09601 288 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 P4HA1P13674 534 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ZSCAN20P17040 1043 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 GSDMDP57764 484 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 CEP85LQ5SZL2 805 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 TPTE2Q6XPS3 522 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC144CPQ8IYA2 1237 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 BICD1Q96G01 975 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 CSRNP2Q9H175 543 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 C6orf50Q9HD87 102 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 PNMA3Q9UL41 463 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 CCDC88BA6NC98 1476 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 SSBP05455 408 aaKnown RBP eCLIP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ERCC5P28715 1186 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 SNW1Q13573 536 aaKnown RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 SAFB2Q14151 953 aaKnown RBP eCLIP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 DCAF15Q66K64 600 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 BTN2A1Q7KYR7 527 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 DDX54Q8TDD1 881 aaKnown RBP3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ARL8AQ96BM9 186 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 NFU1Q9UMS0 254 aa3.09□□□□□ -1.91
SCN1A-219ENST00000641575 ACEP12821 1306 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 H0YIN7 160 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 CAPN2P17655 700 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 PCDHB8Q9UN66 801 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 WDR81Q562E7 1941 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 ABCA5Q8WWZ7 1642 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 GOLGA8QA0A0J9YX86 632 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 GOLGA8OA6NCC3 632 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 GOLGA8NF8WBI6 632 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 DYRK3O43781 588 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 ATP6V1AP38606 617 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 GUCA1AP43080 201 aaPredicted RBP3.09□□□□□ -1.92
SCN1A-219ENST00000641575 GJC2Q5T442 439 aaPredicted RBP3.09□□□□□ -1.92
SCN1A-219ENST00000641575 TBC1D19Q8N5T2 526 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 SETDB2Q96T68 719 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 DNAJC7Q99615 494 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 EIF2AQ9BY44 585 aaKnown RBP3.09□□□□□ -1.92
SCN1A-219ENST00000641575 ECT2Q9H8V3 914 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 TRAK1Q9UPV9 953 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 ZDBF2Q9HCK1 2354 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 ABL2P42684 1182 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 COG7P83436 770 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 NBPF9Q3BBW0 867 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 ACBD5Q5T8D3 534 aaPredicted RBP3.09□□□□□ -1.92
SCN1A-219ENST00000641575 TXNDC2Q86VQ3 553 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 SLC12A6Q9UHW9 1150 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 TNIKQ9UKE5 1360 aa3.09□□□□□ -1.92
SCN1A-219ENST00000641575 RPRD2Q5VT52 1461 aaKnown RBP3.09□□□□□ -1.92
SCN1A-219ENST00000641575 SMCO2A6NFE2 343 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 WDR46O15213 610 aaKnown RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 STX1AQ16623 288 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 SND1Q7KZF4 910 aaKnown RBP eCLIP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 OTOAQ7RTW8 1153 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 SYCP3Q8IZU3 236 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 FAM76AQ8TAV0 307 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 CAPZA3Q96KX2 299 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 API5Q9BZZ5 524 aaKnown RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ATP6V0A4Q9HBG4 840 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 JADE2Q9NQC1 790 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ANO9A1A5B4 782 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ATF7P17544 494 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 EXOSC9Q06265 439 aaKnown RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 GKAP1Q5VSY0 366 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 DYRK4Q9NR20 520 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ABT1Q9ULW3 272 aaKnown RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 SPG11Q96JI7 2443 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 TMEM247A6NEH6 219 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 VSTM5A8MXK1 200 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 GIGYF1O75420 1035 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-219ENST00000641575 INPP5BP32019 993 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 ELF1P32519 619 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 KCNJ6P48051 423 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 RAP1GDS1P52306 607 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 RPS6KA2Q15349 733 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 CLEC16AQ2KHT3 1053 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 TMCO4Q5TGY1 634 aa3.08□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC62Q6P9F0 684 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms