RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 PDE4BQ07343 736 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 MAP3K12Q12852 859 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 TBX2Q13207 712 aaPredicted RBP23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 ARHGAP29Q52LW3 1261 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 CREBRFQ8IUR6 639 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 DIS3L2Q8IYB7 885 aaKnown RBP23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 MLKLQ8NB16 471 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 TRMT112Q9UI30 125 aaKnown RBP23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 LRP5O75197 1615 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 ARAP2Q8WZ64 1704 aa23.07■■□□□ 1.28
SYNGAP1-227ENST00000638142 BTBD18B2RXH4 712 aa23.06■■□□□ 1.28
SYNGAP1-227ENST00000638142 SPATA5Q8NB90 893 aa23.06■■□□□ 1.28
SYNGAP1-227ENST00000638142 FBXO2Q9UK22 296 aaPredicted RBP23.06■■□□□ 1.28
SYNGAP1-227ENST00000638142 MAN1B1Q9UKM7 699 aa23.06■■□□□ 1.28
SYNGAP1-227ENST00000638142 UBE2Q2LH0YL09 131 aa23.06■■□□□ 1.28
SYNGAP1-227ENST00000638142 MBD4O95243 580 aa23.06■■□□□ 1.28
SYNGAP1-227ENST00000638142 TOB1P50616 345 aaPredicted RBP23.06■■□□□ 1.28
SYNGAP1-227ENST00000638142 ZNF579Q8NAF0 562 aaKnown RBP23.06■■□□□ 1.28
SYNGAP1-227ENST00000638142 UBXN4Q92575 508 aa23.06■■□□□ 1.28
SYNGAP1-227ENST00000638142 INCENPQ9NQS7 918 aa23.06■■□□□ 1.28
SYNGAP1-227ENST00000638142 CLCN6P51797 869 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 CTDSPL2Q05D32 466 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 SART3Q15020 963 aaKnown RBP23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 MFSD6Q6ZSS7 791 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 TRIML1Q8N9V2 468 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 MNS1Q8NEH6 495 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 ENOX1Q8TC92 643 aaKnown RBP23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 MTA3Q9BTC8 594 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 PPP2R2CQ9Y2T4 447 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 FOXN1O15353 648 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 ZNF18P17022 549 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 RTN1Q16799 776 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 MAGEB6Q8N7X4 407 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 MPHOSPH8Q99549 860 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 STRN4Q9NRL3 753 aa23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 ARGLU1Q9NWB6 273 aaPredicted RBP23.05■■□□□ 1.28
SYNGAP1-227ENST00000638142 DOCK2Q92608 1830 aa23.04■■□□□ 1.28
SYNGAP1-227ENST00000638142 STX10O60499 249 aa23.04■■□□□ 1.28
SYNGAP1-227ENST00000638142 SARSP49591 514 aaKnown RBP23.04■■□□□ 1.28
SYNGAP1-227ENST00000638142 BAG1Q99933 345 aaPredicted RBP23.04■■□□□ 1.28
SYNGAP1-227ENST00000638142 TPM1P09493 284 aa23.04■■□□□ 1.28
SYNGAP1-227ENST00000638142 RCAN1P53805 252 aa23.04■■□□□ 1.28
SYNGAP1-227ENST00000638142 KANK3Q6NY19 840 aa23.04■■□□□ 1.28
SYNGAP1-227ENST00000638142 STAG1Q8WVM7 1258 aa23.04■■□□□ 1.28
SYNGAP1-227ENST00000638142 SMARCE1Q969G3 411 aa23.04■■□□□ 1.28
SYNGAP1-227ENST00000638142 NFE2L3Q9Y4A8 694 aa23.04■■□□□ 1.28
SYNGAP1-227ENST00000638142 PARP3Q9Y6F1 533 aa23.04■■□□□ 1.28
SYNGAP1-227ENST00000638142 CCDC196A0A1B0GTZ2 297 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 VWA3AA6NCI4 1184 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 GSG1L2A8MUP6 293 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 EFCAB8A8MWE9 144 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 URI1O94763 535 aaPredicted RBP23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 DEXIO95424 95 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 SLC5A1P13866 664 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 GNAT2P19087 354 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 GUCY1A2P33402 732 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 HSPA2P54652 639 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 MORC3Q14149 939 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 SPECC1Q5M775 1068 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 SPECC1LQ69YQ0 1117 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 CEP131Q9UPN4 1083 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 TACC3Q9Y6A5 838 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 SOS2Q07890 1332 aaPredicted RBP23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 POLR2DO15514 142 aaKnown RBP23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 TADA3O75528 432 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 EVA1CP58658 441 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 GOLGA8FQ08AF8 430 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 GOLGA8DPQ0D2H9 430 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 WTAPQ15007 396 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 TMTC2Q8N394 836 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 NACAP1Q9BZK3 213 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 ARMT1Q9H993 441 aa23.03■■□□□ 1.28
SYNGAP1-227ENST00000638142 FANCGO15287 622 aa23.02■■□□□ 1.28
SYNGAP1-227ENST00000638142 KCNJ14Q9UNX9 436 aa23.02■■□□□ 1.28
SYNGAP1-227ENST00000638142 FHOD1Q9Y613 1164 aa23.02■■□□□ 1.28
SYNGAP1-227ENST00000638142 CCDC66A2RUB6 948 aa23.02■■□□□ 1.28
SYNGAP1-227ENST00000638142 CDK11BP21127 795 aaKnown RBP23.02■■□□□ 1.28
SYNGAP1-227ENST00000638142 RASGRF1Q13972 1273 aa23.02■■□□□ 1.28
SYNGAP1-227ENST00000638142 NUTM2AQ8IVF1 878 aaPredicted RBP23.02■■□□□ 1.28
SYNGAP1-227ENST00000638142 SERTAD1Q9UHV2 236 aa23.02■■□□□ 1.28
SYNGAP1-227ENST00000638142 SRPRBQ9Y5M8 271 aaKnown RBP23.02■■□□□ 1.28
SYNGAP1-227ENST00000638142 ERICH2A1L162 156 aa23.01■■□□□ 1.27
SYNGAP1-227ENST00000638142 CYP19A1P11511 503 aaPredicted RBP23.01■■□□□ 1.27
SYNGAP1-227ENST00000638142 FMR1Q06787 632 aaKnown RBP eCLIP23.01■■□□□ 1.27
SYNGAP1-227ENST00000638142 PNPLA7Q6ZV29 1317 aa23.01■■□□□ 1.27
SYNGAP1-227ENST00000638142 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.01■■□□□ 1.27
SYNGAP1-227ENST00000638142 ERVV-1B6SEH8 477 aa23.01■■□□□ 1.27
SYNGAP1-227ENST00000638142 GRIN1Q05586 938 aa23.01■■□□□ 1.27
SYNGAP1-227ENST00000638142 CRACR2BQ8N4Y2 399 aaPredicted RBP23.01■■□□□ 1.27
SYNGAP1-227ENST00000638142 TC2NQ8N9U0 490 aa23.01■■□□□ 1.27
SYNGAP1-227ENST00000638142 AK7Q96M32 723 aa23.01■■□□□ 1.27
SYNGAP1-227ENST00000638142 ABCA3Q99758 1704 aa23■■□□□ 1.27
SYNGAP1-227ENST00000638142 PRR29P0C7W0 189 aa23■■□□□ 1.27
SYNGAP1-227ENST00000638142 HELBQ8NG08 1087 aaPredicted RBP23■■□□□ 1.27
SYNGAP1-227ENST00000638142 TDO2P48775 406 aa23■■□□□ 1.27
SYNGAP1-227ENST00000638142 TMCO3Q6UWJ1 677 aa23■■□□□ 1.27
SYNGAP1-227ENST00000638142 PDILTQ8N807 584 aa23■■□□□ 1.27
SYNGAP1-227ENST00000638142 SPATA20Q8TB22 786 aa23■■□□□ 1.27
SYNGAP1-227ENST00000638142 CARD6Q9BX69 1037 aa23■■□□□ 1.27
SYNGAP1-227ENST00000638142 PCDHB6Q9Y5E3 794 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms