RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TNNC2P02585 160 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 USP14P54578 494 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 GOLGA8FQ08AF8 430 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 GOLGA8DPQ0D2H9 430 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 DCUN1D2Q6PH85 259 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 PANK2Q9BZ23 570 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 FLT4P35916 1363 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 TTC36A6NLP5 189 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 TRIM50Q86XT4 487 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 ATP2A3Q93084 1043 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 SLC10A4Q96EP9 437 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 THUMPD2Q9BTF0 503 aaKnown RBP6.83□□□□□ -1.32
SCN1A-217ENST00000637988 ITM2BQ9Y287 266 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 BCRP11274 1271 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 SLC39A6Q13433 755 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 RYBPQ8N488 228 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-217ENST00000637988 JPH2Q9BR39 696 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-217ENST00000637988 TRIM56Q9BRZ2 755 aaKnown RBP6.83□□□□□ -1.32
SCN1A-217ENST00000637988 MROH5Q6ZUA9 1318 aa6.83□□□□□ -1.32
SCN1A-217ENST00000637988 TLR3O15455 904 aaKnown RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 WDR62O43379 1518 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 ITKQ08881 620 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 TFDP1Q14186 410 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 PDCL2Q8N4E4 241 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 CCDC68Q9H2F9 335 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 RALGAPBQ86X10 1494 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 HMGB3O15347 200 aaKnown RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 GJB2P29033 226 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 FBXW4P57775 412 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 SARNPP82979 210 aaKnown RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 URI1O94763 535 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 S100BP04271 92 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 GNAT1P11488 350 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 ANXA13P27216 316 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 PPFIA1Q13136 1202 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 RPUSD2Q8IZ73 545 aaKnown RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 IPO4Q8TEX9 1081 aaKnown RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 DNM3Q9UQ16 869 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 PPP2R5CQ13362 524 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 PIDD1Q9HB75 910 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 SPDYE2BA6NHP3 402 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 ZNF233A6NK53 670 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 SPDYE6P0CI01 402 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 CSRNP1Q96S65 589 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 CPSF3Q9UKF6 684 aaKnown RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 TTF2Q9UNY4 1162 aaKnown RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 MRPL11Q9Y3B7 192 aaKnown RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 DISP3Q9P2K9 1392 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 TESPA1A2RU30 521 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 CALCOCO2Q13137 446 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 CASC4Q6P4E1 433 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 KRT26Q7Z3Y9 468 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 JARID2Q92833 1246 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 CSPG5O95196 566 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 SRGAP2BP0DMP2 458 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 LGSNQ5TDP6 509 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 TMC6Q7Z403 805 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 NDUFAF2Q8N183 169 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 RBM46Q8TBY0 533 aaKnown RBP6.82□□□□□ -1.32
SCN1A-217ENST00000637988 SLITRK6Q9H5Y7 841 aa6.82□□□□□ -1.32
SCN1A-217ENST00000637988 KDM2BQ8NHM5 1336 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 RNF113AO15541 343 aaKnown RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 DMP1Q13316 513 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 RAPGEF1Q13905 1077 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 PRPSAP1Q14558 356 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 PPP2R5DQ14738 602 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 RNF219Q5W0B1 726 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 NUCKS1Q9H1E3 243 aaKnown RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 SYCE3A1L190 88 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 KIF28PB7ZC32 967 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 DPYSL4O14531 572 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 KRT86O43790 486 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 MYCP01106 439 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 ABCD1P33897 745 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 CFBP00751 764 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 KRT81Q14533 505 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 MMS19Q96T76 1030 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 IBTKQ9P2D0 1353 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 SOS1Q07889 1333 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 FLOT1O75955 427 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 GCP02774 474 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 KRT27Q7Z3Y8 459 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 AKT3Q9Y243 479 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 BIN1O00499 593 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 SPOPO43791 374 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 TNNI1P19237 187 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 ITGA6P23229 1130 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 ATP2B4P23634 1241 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 ADCY7P51828 1080 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 IFRD2Q12894 506 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 UAP1Q16222 522 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 AATFQ9NY61 560 aaKnown RBP eCLIP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 FNDC3AQ9Y2H6 1198 aaKnown RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 NUB1Q9Y5A7 615 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 GAS7O60861 476 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 TERF1P54274 439 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 UBASH3AP57075 661 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 LETM2Q2VYF4 491 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 TMC4Q7Z404 712 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 YAF2Q8IY57 180 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms