RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	PICALM	Q13492	652 aa		13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	SART3	Q15020	963 aa	Known RBP	13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	ME3	Q16798	604 aa		13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	STK11IP	Q8N1F8	1099 aa		13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	TMTC2	Q8N394	836 aa		13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	IGDCC4	Q8TDY8	1250 aa		13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	CHMP4C	Q96CF2	233 aa		13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	TDRD3	Q9H7E2	651 aa	Known RBP	13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	TAOK2	Q9UL54	1235 aa		13.86	□□□□□ -0.19
CLN6-223	ENST00000637823	IFIT3	O14879	490 aa	Known RBP	13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	RANBP6	O60518	1105 aa	Known RBP	13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	ENTPD3	O75355	529 aa		13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	LIFR	P42702	1097 aa		13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	ZNF280A	P59817	542 aa	Predicted RBP	13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	APOBR	Q0VD83	1088 aa		13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	TMEM67	Q5HYA8	995 aa		13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	C16orf86	Q6ZW13	317 aa		13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	NKX2-3	Q8TAU0	364 aa		13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	ZBED3	Q96IU2	234 aa	Predicted RBP	13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	DHX36	Q9H2U1	1008 aa	Known RBP	13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	MKNK2	Q9HBH9	465 aa		13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	TMOD2	Q9NZR1	351 aa		13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	ANGEL1	Q9UNK9	670 aa	Known RBP	13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	GJA3	Q9Y6H8	435 aa		13.85	□□□□□ -0.19
CLN6-223	ENST00000637823	ERICH2	A1L162	156 aa		13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	SH2B2	O14492	632 aa	Predicted RBP	13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	PFKFB2	O60825	505 aa		13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	LARGE1	O95461	756 aa		13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	DDIT3	P35638	169 aa		13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	GMPS	P49915	693 aa	Predicted RBP	13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	EVX2	Q03828	476 aa		13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	NFIA	Q12857	509 aa		13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	FKBP1C	Q5VVH2	108 aa		13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	DYNLL2	Q96FJ2	89 aa		13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	SLK	Q9H2G2	1235 aa	Predicted RBP	13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	MYOZ2	Q9NPC6	264 aa		13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	FOXD4L1	Q9NU39	408 aa		13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	ZNF70	Q9UC06	446 aa	Predicted RBP	13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	FAM198A	Q9UFP1	575 aa		13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.84	□□□□□ -0.19
CLN6-223	ENST00000637823	COL2A1	P02458	1487 aa	Predicted RBP	13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	MYO1B	O43795	1136 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	PRDM1	O75626	825 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	HLA-DOA	P06340	250 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	PDIA3	P30101	505 aa	Known RBP	13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	CDK8	P49336	464 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	SLC4A8	Q2Y0W8	1093 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	SPDYE2	Q495Y8	402 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	CCDC178	Q5BJE1	867 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	SGMS1	Q86VZ5	419 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	IQCA1	Q86XH1	822 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	CCDC83	Q8IWF9	413 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	GPC2	Q8N158	579 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	UBAC1	Q9BSL1	405 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	LY9	Q9HBG7	655 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	GPHN	Q9NQX3	736 aa	Predicted RBP	13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	CHMP5	Q9NZZ3	219 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	CNOT7	Q9UIV1	285 aa	Known RBP	13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	ZNF541	Q9H0D2	1346 aa		13.83	□□□□□ -0.2
CLN6-223	ENST00000637823	KLF18	A0A0U1RQI7	1052 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823		H7C1D1	291 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	GRIN3B	O60391	1043 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	CACNB3	P54284	484 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	GABPA	Q06546	454 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	TCP10	Q12799	353 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	STK3	Q13188	491 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	WTAP	Q15007	396 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	SEC23A	Q15436	765 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	GPR162	Q16538	588 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	NFXL1	Q6ZNB6	911 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	ZFPM1	Q8IX07	1006 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	NECAB1	Q8N987	351 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	GTF3C6	Q969F1	213 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	EHD4	Q9H223	541 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	TCP11L1	Q9NUJ3	509 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	RNF181	Q9P0P0	153 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	PI4KB	Q9UBF8	816 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	SWAP70	Q9UH65	585 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	SERPINB13	Q9UIV8	391 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	BRPF3	Q9ULD4	1205 aa		13.82	□□□□□ -0.2
CLN6-223	ENST00000637823	SIPA1L1	O43166	1804 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	CCDC69	A6NI79	296 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	TSPY2	A6NKD2	308 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	WNT10B	O00744	389 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	RASA1	P20936	1047 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	TFAP4	Q01664	338 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	FAM47A	Q5JRC9	791 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	SYNE3	Q6ZMZ3	975 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	MICALL2	Q8IY33	904 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	FAM151A	Q8WW52	585 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	ZKSCAN3	Q9BRR0	538 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	LLPH	Q9BRT6	129 aa	Known RBP	13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	SMC3	Q9UQE7	1217 aa		13.81	□□□□□ -0.2
CLN6-223	ENST00000637823	ATRNL1	Q5VV63	1379 aa		13.81	□□□□□ -0.2

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