RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 ZSCAN31Q96LW9 406 aaPredicted RBP22.44■■□□□ 1.18
CLN3-258ENST00000637184 AGXT2Q9BYV1 514 aa22.44■■□□□ 1.18
CLN3-258ENST00000637184 MYO1BO43795 1136 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 ORC4O43929 436 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 GRIN3BO60391 1043 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 C9orf131Q5VYM1 1079 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 MICALL2Q8IY33 904 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 FBXL16Q8N461 479 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 NKX2-3Q8TAU0 364 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 BRF1Q92994 677 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 CNOT7Q9UIV1 285 aaKnown RBP22.43■■□□□ 1.18
CLN3-258ENST00000637184 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.43■■□□□ 1.18
CLN3-258ENST00000637184 SHTN1A0MZ66 631 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 PRDM1O75626 825 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 TCP10Q12799 353 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 DYNLL2Q96FJ2 89 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 TMEM87BQ96K49 555 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 ZNF287Q9HBT7 754 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 FAM198AQ9UFP1 575 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 TPCN1Q9ULQ1 816 aa22.43■■□□□ 1.18
CLN3-258ENST00000637184 RANBP6O60518 1105 aaKnown RBP22.42■■□□□ 1.18
CLN3-258ENST00000637184 SH2B1Q9NRF2 756 aaPredicted RBP22.42■■□□□ 1.18
CLN3-258ENST00000637184 ZNF70Q9UC06 446 aaPredicted RBP22.42■■□□□ 1.18
CLN3-258ENST00000637184 WNT10BO00744 389 aa22.41■■□□□ 1.18
CLN3-258ENST00000637184 ENTPD3O75355 529 aa22.41■■□□□ 1.18
CLN3-258ENST00000637184 HLA-DOAP06340 250 aa22.41■■□□□ 1.18
CLN3-258ENST00000637184 NT5C2P49902 561 aa22.41■■□□□ 1.18
CLN3-258ENST00000637184 SPDYE2Q495Y8 402 aa22.41■■□□□ 1.18
CLN3-258ENST00000637184 ZBED3Q96IU2 234 aaPredicted RBP22.41■■□□□ 1.18
CLN3-258ENST00000637184 MKNK2Q9HBH9 465 aa22.41■■□□□ 1.18
CLN3-258ENST00000637184 CLRN2A0PK11 232 aa22.4■■□□□ 1.18
CLN3-258ENST00000637184 SART3Q15020 963 aaKnown RBP22.4■■□□□ 1.18
CLN3-258ENST00000637184 C16orf86Q6ZW13 317 aa22.4■■□□□ 1.18
CLN3-258ENST00000637184 DHX36Q9H2U1 1008 aaKnown RBP22.4■■□□□ 1.18
CLN3-258ENST00000637184 CUL4AQ13619 759 aa22.4■■□□□ 1.18
CLN3-258ENST00000637184 ME3Q16798 604 aa22.4■■□□□ 1.18
CLN3-258ENST00000637184 RBM26Q5T8P6 1007 aaKnown RBP22.4■■□□□ 1.18
CLN3-258ENST00000637184 ZFPM1Q8IX07 1006 aa22.4■■□□□ 1.18
CLN3-258ENST00000637184 MTA3Q9BTC8 594 aa22.4■■□□□ 1.18
CLN3-258ENST00000637184 ANGEL1Q9UNK9 670 aaKnown RBP22.4■■□□□ 1.18
CLN3-258ENST00000637184 H7C1D1 291 aa22.39■■□□□ 1.17
CLN3-258ENST00000637184 IFIT3O14879 490 aaKnown RBP22.39■■□□□ 1.17
CLN3-258ENST00000637184 APOBRQ0VD83 1088 aa22.39■■□□□ 1.17
CLN3-258ENST00000637184 NBPF9Q3BBW0 867 aa22.39■■□□□ 1.17
CLN3-258ENST00000637184 ZSCAN29Q8IWY8 852 aaPredicted RBP22.39■■□□□ 1.17
CLN3-258ENST00000637184 UBAC1Q9BSL1 405 aa22.39■■□□□ 1.17
CLN3-258ENST00000637184 FOXD4L1Q9NU39 408 aa22.39■■□□□ 1.17
CLN3-258ENST00000637184 ERICH2A1L162 156 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 TCP10L2B9ZVM9 353 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 SH2B2O14492 632 aaPredicted RBP22.38■■□□□ 1.17
CLN3-258ENST00000637184 LARGE1O95461 756 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 CDK8P49336 464 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 TMEM67Q5HYA8 995 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 FKBP1CQ5VVH2 108 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 IQCA1Q86XH1 822 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 ZNF444Q8N0Y2 327 aaPredicted RBP22.38■■□□□ 1.17
CLN3-258ENST00000637184 SLC44A5Q8NCS7 719 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 IGDCC4Q8TDY8 1250 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 VEZTQ9HBM0 779 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 GPHNQ9NQX3 736 aaPredicted RBP22.38■■□□□ 1.17
CLN3-258ENST00000637184 SERPINB13Q9UIV8 391 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 TSPY2A6NKD2 308 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 TBC1D10BQ4KMP7 808 aaPredicted RBP22.38■■□□□ 1.17
CLN3-258ENST00000637184 SAMD7Q7Z3H4 446 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 ZKSCAN3Q9BRR0 538 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 SLKQ9H2G2 1235 aaPredicted RBP22.38■■□□□ 1.17
CLN3-258ENST00000637184 GPRC5DQ9NZD1 345 aa22.38■■□□□ 1.17
CLN3-258ENST00000637184 DDNO94850 711 aaPredicted RBP22.37■■□□□ 1.17
CLN3-258ENST00000637184 INTS4Q96HW7 963 aaKnown RBP22.37■■□□□ 1.17
CLN3-258ENST00000637184 PI4KBQ9UBF8 816 aa22.37■■□□□ 1.17
CLN3-258ENST00000637184 COL2A1P02458 1487 aaPredicted RBP22.37■■□□□ 1.17
CLN3-258ENST00000637184 DDTLA6NHG4 134 aaPredicted RBP22.36■■□□□ 1.17
CLN3-258ENST00000637184 EGFRP00533 1210 aa22.36■■□□□ 1.17
CLN3-258ENST00000637184 EVCP57679 992 aa22.36■■□□□ 1.17
CLN3-258ENST00000637184 GABPAQ06546 454 aa22.36■■□□□ 1.17
CLN3-258ENST00000637184 KIF4BQ2VIQ3 1234 aa22.36■■□□□ 1.17
CLN3-258ENST00000637184 FAM47AQ5JRC9 791 aa22.36■■□□□ 1.17
CLN3-258ENST00000637184 ZNF274Q96GC6 653 aaPredicted RBP22.36■■□□□ 1.17
CLN3-258ENST00000637184 EHD4Q9H223 541 aa22.36■■□□□ 1.17
CLN3-258ENST00000637184 SWAP70Q9UH65 585 aa22.36■■□□□ 1.17
CLN3-258ENST00000637184 NAP1L2Q9ULW6 460 aaPredicted RBP22.36■■□□□ 1.17
CLN3-258ENST00000637184 LIFRP42702 1097 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 TFAP4Q01664 338 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 STK3Q13188 491 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 WTAPQ15007 396 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 SH3BP5LQ7L8J4 393 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 FAM151AQ8WW52 585 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 ZSCAN10Q96SZ4 725 aaPredicted RBP22.35■■□□□ 1.17
CLN3-258ENST00000637184 LY9Q9HBG7 655 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 ATRNL1Q5VV63 1379 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 MYH8P13535 1937 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 KLF18A0A0U1RQI7 1052 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 TNKSO95271 1327 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 NFXL1Q6ZNB6 911 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 FAM83AQ86UY5 434 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 CCDC83Q8IWF9 413 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 TMTC2Q8N394 836 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 CRACR2BQ8N4Y2 399 aaPredicted RBP22.35■■□□□ 1.17
CLN3-258ENST00000637184 NECAB1Q8N987 351 aa22.35■■□□□ 1.17
CLN3-258ENST00000637184 TSPY3P0CV98 308 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms