RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 DIXDC1Q155Q3 683 aa18.16■□□□□ 0.5
CLN3-251ENST00000636853 KLHL34Q8N239 644 aa18.16■□□□□ 0.5
CLN3-251ENST00000636853 FANCBQ8NB91 859 aa18.16■□□□□ 0.5
CLN3-251ENST00000636853 GGA1Q9UJY5 639 aa18.16■□□□□ 0.5
CLN3-251ENST00000636853 ZBTB22O15209 634 aa18.16■□□□□ 0.5
CLN3-251ENST00000636853 FGRP09769 529 aa18.16■□□□□ 0.5
CLN3-251ENST00000636853 ATP2B4P23634 1241 aa18.16■□□□□ 0.5
CLN3-251ENST00000636853 SF3A1Q15459 793 aaKnown RBP18.16■□□□□ 0.5
CLN3-251ENST00000636853 RBM43Q6ZSC3 357 aaKnown RBP18.16■□□□□ 0.5
CLN3-251ENST00000636853 C15orf52Q6ZUT6 534 aaKnown RBP18.16■□□□□ 0.5
CLN3-251ENST00000636853 FSIP1Q8NA03 581 aa18.16■□□□□ 0.5
CLN3-251ENST00000636853 POLR3EQ9NVU0 708 aa18.16■□□□□ 0.5
CLN3-251ENST00000636853 MRVI1Q9Y6F6 885 aa18.16■□□□□ 0.5
CLN3-251ENST00000636853 BBOX1O75936 387 aa18.15■□□□□ 0.5
CLN3-251ENST00000636853 SNW1Q13573 536 aaKnown RBP18.15■□□□□ 0.5
CLN3-251ENST00000636853 GNL2Q13823 731 aaKnown RBP18.15■□□□□ 0.5
CLN3-251ENST00000636853 CCDC73Q6ZRK6 1079 aa18.15■□□□□ 0.5
CLN3-251ENST00000636853 NBPF11Q86T75 865 aa18.15■□□□□ 0.5
CLN3-251ENST00000636853 CD209Q9NNX6 404 aa18.15■□□□□ 0.5
CLN3-251ENST00000636853 USP17L8P0C7I0 530 aa18.15■□□□□ 0.5
CLN3-251ENST00000636853 HOXA10P31260 410 aaPredicted RBP18.15■□□□□ 0.5
CLN3-251ENST00000636853 IFIT1BQ5T764 474 aaKnown RBP18.15■□□□□ 0.5
CLN3-251ENST00000636853 ANO1Q5XXA6 986 aa18.15■□□□□ 0.5
CLN3-251ENST00000636853 IQCA1Q86XH1 822 aa18.15■□□□□ 0.5
CLN3-251ENST00000636853 CRACR2BQ8N4Y2 399 aaPredicted RBP18.15■□□□□ 0.5
CLN3-251ENST00000636853 RGS22Q8NE09 1264 aa18.15■□□□□ 0.5
CLN3-251ENST00000636853 MCM9Q9NXL9 1143 aa18.15■□□□□ 0.5
CLN3-251ENST00000636853 POLLQ9UGP5 575 aa18.15■□□□□ 0.5
CLN3-251ENST00000636853 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.15■□□□□ 0.5
CLN3-251ENST00000636853 LAMB1P07942 1786 aa18.14■□□□□ 0.5
CLN3-251ENST00000636853 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.14■□□□□ 0.49
CLN3-251ENST00000636853 CCDC196A0A1B0GTZ2 297 aa18.14■□□□□ 0.49
CLN3-251ENST00000636853 YEATS4O95619 227 aa18.14■□□□□ 0.49
CLN3-251ENST00000636853 TPM2P07951 284 aa18.14■□□□□ 0.49
CLN3-251ENST00000636853 PCP11498 1178 aaKnown RBP18.14■□□□□ 0.49
CLN3-251ENST00000636853 RBM6P78332 1123 aaKnown RBP18.14■□□□□ 0.49
CLN3-251ENST00000636853 HSP90AA2PQ14568 343 aaPredicted RBP18.14■□□□□ 0.49
CLN3-251ENST00000636853 FAM47AQ5JRC9 791 aa18.14■□□□□ 0.49
CLN3-251ENST00000636853 TRIM22Q8IYM9 498 aa18.14■□□□□ 0.49
CLN3-251ENST00000636853 SH3RF3Q8TEJ3 882 aaPredicted RBP18.14■□□□□ 0.49
CLN3-251ENST00000636853 ARPP21Q9UBL0 812 aaPredicted RBP18.14■□□□□ 0.49
CLN3-251ENST00000636853 SPTLC2O15270 562 aa18.14■□□□□ 0.49
CLN3-251ENST00000636853 NMT2O60551 498 aa18.14■□□□□ 0.49
CLN3-251ENST00000636853 APBA3O96018 575 aa18.14■□□□□ 0.49
CLN3-251ENST00000636853 ADALQ6DHV7 355 aa18.14■□□□□ 0.49
CLN3-251ENST00000636853 COL23A1Q86Y22 540 aaPredicted RBP18.14■□□□□ 0.49
CLN3-251ENST00000636853 ENGASEQ8NFI3 743 aa18.14■□□□□ 0.49
CLN3-251ENST00000636853 KCNG4Q8TDN1 519 aa18.14■□□□□ 0.49
CLN3-251ENST00000636853 KIAA1551Q9HCM1 1747 aa18.13■□□□□ 0.49
CLN3-251ENST00000636853 USP5P45974 858 aa18.13■□□□□ 0.49
CLN3-251ENST00000636853 RCAN1P53805 252 aa18.13■□□□□ 0.49
CLN3-251ENST00000636853 FAM160A1Q05DH4 1040 aa18.13■□□□□ 0.49
CLN3-251ENST00000636853 SBK1Q52WX2 424 aa18.13■□□□□ 0.49
CLN3-251ENST00000636853 TMED8Q6PL24 325 aaPredicted RBP18.13■□□□□ 0.49
CLN3-251ENST00000636853 TBC1D16Q8TBP0 767 aa18.13■□□□□ 0.49
CLN3-251ENST00000636853 WASF1Q92558 559 aa18.13■□□□□ 0.49
CLN3-251ENST00000636853 CRAMP1Q96RY5 1269 aa18.13■□□□□ 0.49
CLN3-251ENST00000636853 KCNJ14Q9UNX9 436 aa18.13■□□□□ 0.49
CLN3-251ENST00000636853 A0A1B0GVL5 298 aa18.12■□□□□ 0.49
CLN3-251ENST00000636853 ORC4O43929 436 aa18.12■□□□□ 0.49
CLN3-251ENST00000636853 ANO6Q4KMQ2 910 aa18.12■□□□□ 0.49
CLN3-251ENST00000636853 MRPS27Q92552 414 aaKnown RBP18.12■□□□□ 0.49
CLN3-251ENST00000636853 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLN3-251ENST00000636853 KLRG2A4D1S0 409 aaPredicted RBP18.12■□□□□ 0.49
CLN3-251ENST00000636853 C6orf229H3BNL8 230 aa18.12■□□□□ 0.49
CLN3-251ENST00000636853 U2AF2P26368 475 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLN3-251ENST00000636853 PLCB2Q00722 1185 aa18.12■□□□□ 0.49
CLN3-251ENST00000636853 SASS6Q6UVJ0 657 aa18.12■□□□□ 0.49
CLN3-251ENST00000636853 CATIPQ7Z7H3 387 aa18.12■□□□□ 0.49
CLN3-251ENST00000636853 KINO60870 393 aaKnown RBP18.11■□□□□ 0.49
CLN3-251ENST00000636853 DEXIO95424 95 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 SLC3A2P08195 630 aaKnown RBP18.11■□□□□ 0.49
CLN3-251ENST00000636853 IL1R1P14778 569 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 GSTO1P78417 241 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 AKT1S1Q96B36 256 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 PODXL2Q9NZ53 605 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 MKRN1Q9UHC7 482 aaKnown RBP18.11■□□□□ 0.49
CLN3-251ENST00000636853 A0A1W2PQ27 194 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 A0A1W2PQ64 194 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 A0A1W2PQD8 194 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 ADCY5O95622 1261 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 MARCKSP29966 332 aaPredicted RBP18.11■□□□□ 0.49
CLN3-251ENST00000636853 NDUFA8P51970 172 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 FAM200AQ8TCP9 573 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 MYH6P13533 1939 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 ANKRD31Q8N7Z5 1873 aa18.11■□□□□ 0.49
CLN3-251ENST00000636853 DLEC1Q9Y238 1755 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 BTBD18B2RXH4 712 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 PPEF1O14829 653 aaPredicted RBP18.1■□□□□ 0.49
CLN3-251ENST00000636853 PLSCR1O15162 318 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 BAG3O95817 575 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 MMP1P03956 469 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 PDE4BQ07343 736 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 ZNF772Q68DY9 489 aaPredicted RBP18.1■□□□□ 0.49
CLN3-251ENST00000636853 LUZP1Q86V48 1076 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 ZSCAN30Q86W11 494 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 FMR1NBQ8N0W7 255 aaPredicted RBP18.1■□□□□ 0.49
CLN3-251ENST00000636853 TGFBRAP1Q8WUH2 860 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 MROH7-TTC4A0A0A0MT08 1334 aa18.1■□□□□ 0.49
CLN3-251ENST00000636853 hCG_1642624A0A1W2PR95 340 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms