RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 FLT3LGP49771 235 aa19.85■□□□□ 0.77
CLN3-246ENST00000636228 NAA16Q6N069 864 aaPredicted RBP19.85■□□□□ 0.77
CLN3-246ENST00000636228 AATFQ9NY61 560 aaKnown RBP eCLIP19.85■□□□□ 0.77
CLN3-246ENST00000636228 SLC45A1Q9Y2W3 748 aa19.85■□□□□ 0.77
CLN3-246ENST00000636228 DOCK2Q92608 1830 aa19.84■□□□□ 0.77
CLN3-246ENST00000636228 ADCY3O60266 1144 aa19.84■□□□□ 0.77
CLN3-246ENST00000636228 MAP4K4O95819 1239 aaPredicted RBP19.84■□□□□ 0.77
CLN3-246ENST00000636228 CYP2E1P05181 493 aaPredicted RBP19.84■□□□□ 0.77
CLN3-246ENST00000636228 ELNP15502 786 aa19.84■□□□□ 0.77
CLN3-246ENST00000636228 CAP2P40123 477 aa19.84■□□□□ 0.77
CLN3-246ENST00000636228 HNRNPUQ00839 825 aaKnown RBP eCLIP19.84■□□□□ 0.77
CLN3-246ENST00000636228 CCDC158Q5M9N0 1113 aa19.84■□□□□ 0.77
CLN3-246ENST00000636228 ADGRA1Q86SQ6 560 aa19.84■□□□□ 0.77
CLN3-246ENST00000636228 SSH3Q8TE77 659 aa19.84■□□□□ 0.77
CLN3-246ENST00000636228 UNC93B1Q9H1C4 597 aa19.84■□□□□ 0.77
CLN3-246ENST00000636228 COLQQ9Y215 455 aaPredicted RBP19.84■□□□□ 0.77
CLN3-246ENST00000636228 TNPO2O14787 897 aaKnown RBP19.83■□□□□ 0.77
CLN3-246ENST00000636228 RLBP1P12271 317 aa19.83■□□□□ 0.77
CLN3-246ENST00000636228 ZAP70P43403 619 aa19.83■□□□□ 0.77
CLN3-246ENST00000636228 HMGCS2P54868 508 aa19.83■□□□□ 0.77
CLN3-246ENST00000636228 UBXN2AP68543 259 aa19.83■□□□□ 0.77
CLN3-246ENST00000636228 JAG1P78504 1218 aa19.83■□□□□ 0.77
CLN3-246ENST00000636228 MAPKAPK5Q8IW41 473 aa19.83■□□□□ 0.77
CLN3-246ENST00000636228 ZNF280CQ8ND82 737 aa19.83■□□□□ 0.77
CLN3-246ENST00000636228 TGFBRAP1Q8WUH2 860 aa19.83■□□□□ 0.77
CLN3-246ENST00000636228 DPF3Q92784 378 aa19.83■□□□□ 0.77
CLN3-246ENST00000636228 NOL10Q9BSC4 688 aaKnown RBP19.83■□□□□ 0.77
CLN3-246ENST00000636228 GPR108Q9NPR9 543 aa19.83■□□□□ 0.77
CLN3-246ENST00000636228 TLR7Q9NYK1 1049 aaKnown RBP19.83■□□□□ 0.77
CLN3-246ENST00000636228 TAOK2Q9UL54 1235 aa19.83■□□□□ 0.77
CLN3-246ENST00000636228 GJB1P08034 283 aa19.82■□□□□ 0.76
CLN3-246ENST00000636228 GJA8P48165 433 aa19.82■□□□□ 0.76
CLN3-246ENST00000636228 ITPRIPQ8IWB1 547 aa19.82■□□□□ 0.76
CLN3-246ENST00000636228 SLAIN1Q8ND83 568 aa19.82■□□□□ 0.76
CLN3-246ENST00000636228 CCDC8Q9H0W5 538 aaPredicted RBP19.82■□□□□ 0.76
CLN3-246ENST00000636228 PIH1D3Q9NQM4 214 aaKnown RBP19.82■□□□□ 0.76
CLN3-246ENST00000636228 BAG3O95817 575 aa19.81■□□□□ 0.76
CLN3-246ENST00000636228 SHROOM1Q2M3G4 852 aaPredicted RBP19.81■□□□□ 0.76
CLN3-246ENST00000636228 FTSJ3Q8IY81 847 aaKnown RBP19.81■□□□□ 0.76
CLN3-246ENST00000636228 MIER1Q8N108 512 aa19.81■□□□□ 0.76
CLN3-246ENST00000636228 NKX2-3Q8TAU0 364 aa19.81■□□□□ 0.76
CLN3-246ENST00000636228 USP17L5A8MUK1 530 aa19.8■□□□□ 0.76
CLN3-246ENST00000636228 ZBTB7BO15156 539 aaPredicted RBP19.8■□□□□ 0.76
CLN3-246ENST00000636228 INHAP05111 366 aa19.8■□□□□ 0.76
CLN3-246ENST00000636228 DYNLL1P63167 89 aaKnown RBP19.8■□□□□ 0.76
CLN3-246ENST00000636228 PROCA1Q8NCQ7 364 aaPredicted RBP19.8■□□□□ 0.76
CLN3-246ENST00000636228 U2AF1L4Q8WU68 220 aaKnown RBP19.8■□□□□ 0.76
CLN3-246ENST00000636228 PI4KBQ9UBF8 816 aa19.8■□□□□ 0.76
CLN3-246ENST00000636228 SAP30BPQ9UHR5 308 aaKnown RBP19.8■□□□□ 0.76
CLN3-246ENST00000636228 DBNLQ9UJU6 430 aaKnown RBP19.8■□□□□ 0.76
CLN3-246ENST00000636228 PNMA3Q9UL41 463 aa19.8■□□□□ 0.76
CLN3-246ENST00000636228 PALD1Q9ULE6 856 aa19.8■□□□□ 0.76
CLN3-246ENST00000636228 NDUFB9Q9Y6M9 179 aa19.8■□□□□ 0.76
CLN3-246ENST00000636228 PEX10O60683 326 aa19.79■□□□□ 0.76
CLN3-246ENST00000636228 PPP4CP60510 307 aa19.79■□□□□ 0.76
CLN3-246ENST00000636228 EAF2Q96CJ1 260 aaPredicted RBP19.79■□□□□ 0.76
CLN3-246ENST00000636228 ASCC2Q9H1I8 757 aaPredicted RBP19.79■□□□□ 0.76
CLN3-246ENST00000636228 DNAJC18Q9H819 358 aa19.79■□□□□ 0.76
CLN3-246ENST00000636228 HERC5Q9UII4 1024 aaKnown RBP19.79■□□□□ 0.76
CLN3-246ENST00000636228 COL2A1P02458 1487 aaPredicted RBP19.79■□□□□ 0.76
CLN3-246ENST00000636228 FLT1P17948 1338 aa19.78■□□□□ 0.76
CLN3-246ENST00000636228 DOCK1Q14185 1865 aa19.78■□□□□ 0.76
CLN3-246ENST00000636228 GDF11O95390 407 aa19.78■□□□□ 0.76
CLN3-246ENST00000636228 FXR1P51114 621 aaKnown RBP eCLIP19.78■□□□□ 0.76
CLN3-246ENST00000636228 UBE2Q1Q7Z7E8 422 aa19.78■□□□□ 0.76
CLN3-246ENST00000636228 COA7Q96BR5 231 aa19.78■□□□□ 0.76
CLN3-246ENST00000636228 DHX36Q9H2U1 1008 aaKnown RBP19.78■□□□□ 0.76
CLN3-246ENST00000636228 NOP58Q9Y2X3 529 aaKnown RBP19.78■□□□□ 0.76
CLN3-246ENST00000636228 SGPL1O95470 568 aa19.77■□□□□ 0.76
CLN3-246ENST00000636228 PLCG2P16885 1265 aa19.77■□□□□ 0.76
CLN3-246ENST00000636228 CYP7A1P22680 504 aa19.77■□□□□ 0.76
CLN3-246ENST00000636228 IRF5Q13568 498 aa19.77■□□□□ 0.76
CLN3-246ENST00000636228 MTMR2Q13614 643 aa19.77■□□□□ 0.76
CLN3-246ENST00000636228 FAM110CQ1W6H9 321 aa19.77■□□□□ 0.76
CLN3-246ENST00000636228 SH3D19Q5HYK7 790 aa19.77■□□□□ 0.76
CLN3-246ENST00000636228 PXYLP1Q8TE99 480 aa19.77■□□□□ 0.76
CLN3-246ENST00000636228 ZNF512BQ96KM6 892 aaPredicted RBP19.77■□□□□ 0.76
CLN3-246ENST00000636228 AS3MTQ9HBK9 375 aa19.77■□□□□ 0.76
CLN3-246ENST00000636228 PHIPQ8WWQ0 1821 aa19.76■□□□□ 0.75
CLN3-246ENST00000636228 TFRCP02786 760 aaKnown RBP19.76■□□□□ 0.75
CLN3-246ENST00000636228 CHRDL2Q6WN34 429 aa19.76■□□□□ 0.75
CLN3-246ENST00000636228 CRACR2BQ8N4Y2 399 aaPredicted RBP19.76■□□□□ 0.75
CLN3-246ENST00000636228 MIGA1Q8NAN2 632 aa19.76■□□□□ 0.75
CLN3-246ENST00000636228 DEFB118Q96PH6 123 aa19.76■□□□□ 0.75
CLN3-246ENST00000636228 TRIM34Q9BYJ4 488 aa19.76■□□□□ 0.75
CLN3-246ENST00000636228 IDH1O75874 414 aaKnown RBP19.75■□□□□ 0.75
CLN3-246ENST00000636228 FARP2O94887 1054 aaPredicted RBP19.75■□□□□ 0.75
CLN3-246ENST00000636228 GCLCP48506 637 aaPredicted RBP19.75■□□□□ 0.75
CLN3-246ENST00000636228 PABPC4Q13310 644 aaKnown RBP eCLIP19.75■□□□□ 0.753e-6■■■■□ 26.6
CLN3-246ENST00000636228 FOXP4Q8IVH2 680 aaPredicted RBP19.75■□□□□ 0.75
CLN3-246ENST00000636228 P2RX7Q99572 595 aaKnown RBP19.75■□□□□ 0.75
CLN3-246ENST00000636228 WDR18Q9BV38 432 aa19.75■□□□□ 0.75
CLN3-246ENST00000636228 TBC1D2Q9BYX2 928 aa19.75■□□□□ 0.75
CLN3-246ENST00000636228 ANTXR1Q9H6X2 564 aa19.75■□□□□ 0.75
CLN3-246ENST00000636228 EXOC6BQ9Y2D4 811 aa19.75■□□□□ 0.75
CLN3-246ENST00000636228 BACE1P56817 501 aa19.74■□□□□ 0.75
CLN3-246ENST00000636228 CEP85Q6P2H3 762 aa19.74■□□□□ 0.75
CLN3-246ENST00000636228 METTL16Q86W50 562 aaKnown RBP19.74■□□□□ 0.75
CLN3-246ENST00000636228 PANK1Q8TE04 598 aa19.74■□□□□ 0.75
CLN3-246ENST00000636228 ASNSP08243 561 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms