RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 SCARA3Q6AZY7 606 aa6.43□□□□□ -1.38
SCN1A-211ENST00000635893 KCT2Q8NC54 265 aa6.43□□□□□ -1.38
SCN1A-211ENST00000635893 DCDC2CA8MYV0 355 aa6.42□□□□□ -1.38
SCN1A-211ENST00000635893 PAGE1O75459 146 aa6.42□□□□□ -1.38
SCN1A-211ENST00000635893 ZP2Q05996 745 aa6.42□□□□□ -1.38
SCN1A-211ENST00000635893 PKN1Q16512 942 aa6.42□□□□□ -1.38
SCN1A-211ENST00000635893 ZBTB37Q5TC79 503 aa6.42□□□□□ -1.38
SCN1A-211ENST00000635893 LLGL2Q6P1M3 1020 aa6.42□□□□□ -1.38
SCN1A-211ENST00000635893 CDC37L1Q7L3B6 337 aa6.42□□□□□ -1.38
SCN1A-211ENST00000635893 C12orf40Q86WS4 652 aa6.42□□□□□ -1.38
SCN1A-211ENST00000635893 KSR1Q8IVT5 923 aa6.42□□□□□ -1.38
SCN1A-211ENST00000635893 SPACA3Q8IXA5 215 aa6.42□□□□□ -1.38
SCN1A-211ENST00000635893 ANKRD24Q8TF21 1146 aa6.42□□□□□ -1.38
SCN1A-211ENST00000635893 GNAT3A8MTJ3 354 aa6.41□□□□□ -1.38
SCN1A-211ENST00000635893 GIPC1O14908 333 aa6.41□□□□□ -1.38
SCN1A-211ENST00000635893 CLCN7P51798 805 aa6.41□□□□□ -1.38
SCN1A-211ENST00000635893 NKPD1Q17RQ9 610 aa6.41□□□□□ -1.38
SCN1A-211ENST00000635893 UBE3DQ7Z6J8 389 aa6.41□□□□□ -1.38
SCN1A-211ENST00000635893 SLC38A3Q99624 504 aa6.41□□□□□ -1.38
SCN1A-211ENST00000635893 PRDM7Q9NQW5 492 aa6.41□□□□□ -1.38
SCN1A-211ENST00000635893 PCDHA4Q9UN74 947 aa6.41□□□□□ -1.38
SCN1A-211ENST00000635893 FBXO24O75426 580 aa6.4□□□□□ -1.38
SCN1A-211ENST00000635893 BRD1O95696 1058 aa6.4□□□□□ -1.38
SCN1A-211ENST00000635893 EOMESO95936 686 aa6.4□□□□□ -1.38
SCN1A-211ENST00000635893 ZSWIM9Q86XI8 627 aa6.4□□□□□ -1.38
SCN1A-211ENST00000635893 ZNF507Q8TCN5 953 aa6.4□□□□□ -1.38
SCN1A-211ENST00000635893 KRTAP4-7Q9BYR0 210 aa6.4□□□□□ -1.38
SCN1A-211ENST00000635893 OSBPL7Q9BZF2 842 aa6.4□□□□□ -1.38
SCN1A-211ENST00000635893 PRDM5Q9NQX1 630 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-211ENST00000635893 FAM53CQ9NYF3 392 aa6.4□□□□□ -1.38
SCN1A-211ENST00000635893 CYP8B1Q9UNU6 501 aa6.4□□□□□ -1.38
SCN1A-211ENST00000635893 MAPK8IP1Q9UQF2 711 aa6.4□□□□□ -1.38
SCN1A-211ENST00000635893 LRIG2O94898 1065 aa6.39□□□□□ -1.39
SCN1A-211ENST00000635893 MAPK8P45983 427 aa6.39□□□□□ -1.39
SCN1A-211ENST00000635893 ALG1LQ6GMV1 187 aa6.39□□□□□ -1.39
SCN1A-211ENST00000635893 ARMCX6Q7L4S7 300 aa6.39□□□□□ -1.39
SCN1A-211ENST00000635893 ZSCAN29Q8IWY8 852 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-211ENST00000635893 ELMO3Q96BJ8 720 aa6.39□□□□□ -1.39
SCN1A-211ENST00000635893 FAM84AQ96KN4 292 aa6.39□□□□□ -1.39
SCN1A-211ENST00000635893 FOXQ1Q9C009 403 aa6.39□□□□□ -1.39
SCN1A-211ENST00000635893 LMCD1Q9NZU5 365 aa6.39□□□□□ -1.39
SCN1A-211ENST00000635893 PITPNM2Q9BZ72 1349 aa6.39□□□□□ -1.39
SCN1A-211ENST00000635893 LRRC10BA6NIK2 292 aa6.38□□□□□ -1.39
SCN1A-211ENST00000635893 FMR1Q06787 632 aaKnown RBP eCLIP6.38□□□□□ -1.39
SCN1A-211ENST00000635893 MESP2Q0VG99 397 aa6.38□□□□□ -1.39
SCN1A-211ENST00000635893 KCNMB1Q16558 191 aa6.38□□□□□ -1.39
SCN1A-211ENST00000635893 RASIP1Q5U651 963 aa6.38□□□□□ -1.39
SCN1A-211ENST00000635893 BHLHE22Q8NFJ8 381 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-211ENST00000635893 CTNND2Q9UQB3 1225 aa6.38□□□□□ -1.39
SCN1A-211ENST00000635893 AFMP43652 599 aa6.37□□□□□ -1.39
SCN1A-211ENST00000635893 PCNX4Q63HM2 1172 aa6.37□□□□□ -1.39
SCN1A-211ENST00000635893 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.37□□□□□ -1.39
SCN1A-211ENST00000635893 SPG7Q9UQ90 795 aa6.37□□□□□ -1.39
SCN1A-211ENST00000635893 ZNF503-AS2A6NEH8 195 aa6.36□□□□□ -1.39
SCN1A-211ENST00000635893 SLITRK5O94991 958 aa6.36□□□□□ -1.39
SCN1A-211ENST00000635893 ATP2B2Q01814 1243 aa6.36□□□□□ -1.39
SCN1A-211ENST00000635893 INPP5AQ14642 412 aa6.36□□□□□ -1.39
SCN1A-211ENST00000635893 C22orf34Q6ZV56 151 aa6.36□□□□□ -1.39
SCN1A-211ENST00000635893 CYFIP1Q7L576 1253 aa6.36□□□□□ -1.39
SCN1A-211ENST00000635893 HDXQ7Z353 690 aa6.36□□□□□ -1.39
SCN1A-211ENST00000635893 SETDB2Q96T68 719 aa6.36□□□□□ -1.39
SCN1A-211ENST00000635893 FAM8A1Q9UBU6 413 aa6.36□□□□□ -1.39
SCN1A-211ENST00000635893 PRAMEF27A3QJZ7 478 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 FAM155AB1AL88 458 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-211ENST00000635893 CELA3AP09093 270 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 CAP2P40123 477 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 MLANAQ16655 118 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 SFRP5Q5T4F7 317 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 LRFN4Q6PJG9 635 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 MFSD2AQ8NA29 543 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 ASB16Q96NS5 453 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 WNT10AQ9GZT5 417 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 C12orf49Q9H741 205 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 SEMA3GQ9NS98 782 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 WWC3Q9ULE0 1092 aa6.35□□□□□ -1.39
SCN1A-211ENST00000635893 TPX2Q9ULW0 747 aaKnown RBP6.35□□□□□ -1.39
SCN1A-211ENST00000635893 SUPT5HO00267 1087 aaKnown RBP6.34□□□□□ -1.39
SCN1A-211ENST00000635893 ZNF865P0CJ78 1059 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-211ENST00000635893 PTPN11Q06124 597 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-211ENST00000635893 SLBPQ14493 270 aaKnown RBP eCLIP6.34□□□□□ -1.39
SCN1A-211ENST00000635893 FBLN7Q53RD9 439 aa6.34□□□□□ -1.39
SCN1A-211ENST00000635893 SV2BQ7L1I2 683 aa6.34□□□□□ -1.39
SCN1A-211ENST00000635893 MFSD4AQ8N468 514 aa6.34□□□□□ -1.39
SCN1A-211ENST00000635893 PLPPR2Q96GM1 343 aa6.34□□□□□ -1.39
SCN1A-211ENST00000635893 HSPA12BQ96MM6 686 aa6.34□□□□□ -1.39
SCN1A-211ENST00000635893 MIPEPQ99797 713 aa6.34□□□□□ -1.39
SCN1A-211ENST00000635893 CARS2Q9HA77 564 aaKnown RBP6.34□□□□□ -1.39
SCN1A-211ENST00000635893 FBRSQ9HAH7 460 aa6.34□□□□□ -1.39
SCN1A-211ENST00000635893 ATP13A1Q9HD20 1204 aa6.34□□□□□ -1.39
SCN1A-211ENST00000635893 PRR33A8MZF0 331 aa6.33□□□□□ -1.4
SCN1A-211ENST00000635893 GLI1P08151 1106 aa6.33□□□□□ -1.4
SCN1A-211ENST00000635893 USP17L7P0C7H9 530 aa6.33□□□□□ -1.4
SCN1A-211ENST00000635893 FYB2Q5VWT5 728 aa6.33□□□□□ -1.4
SCN1A-211ENST00000635893 SPOCD1Q6ZMY3 1216 aa6.33□□□□□ -1.4
SCN1A-211ENST00000635893 ERICH6Q7L0X2 663 aa6.33□□□□□ -1.4
SCN1A-211ENST00000635893 NPAS4Q8IUM7 802 aa6.33□□□□□ -1.4
SCN1A-211ENST00000635893 LIN37Q96GY3 246 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-211ENST00000635893 SNCAIPQ9Y6H5 919 aa6.33□□□□□ -1.4
SCN1A-211ENST00000635893 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-211ENST00000635893 GDNFP39905 211 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms