RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 NAV1Q8NEY1 1877 aa25.66■■□□□ 1.7
PNKP-220ENST00000627232 MYSM1Q5VVJ2 828 aa25.65■■□□□ 1.7
PNKP-220ENST00000627232 KRT40Q6A162 431 aa25.65■■□□□ 1.7
PNKP-220ENST00000627232 PHKBQ93100 1093 aa25.65■■□□□ 1.7
PNKP-220ENST00000627232 GPR101Q96P66 508 aaPredicted RBP25.65■■□□□ 1.7
PNKP-220ENST00000627232 POLR3EQ9NVU0 708 aa25.65■■□□□ 1.7
PNKP-220ENST00000627232 YEATS4O95619 227 aa25.64■■□□□ 1.7
PNKP-220ENST00000627232 NPR1P16066 1061 aa25.64■■□□□ 1.7
PNKP-220ENST00000627232 MAP3K11Q16584 847 aa25.64■■□□□ 1.7
PNKP-220ENST00000627232 TRIM22Q8IYM9 498 aa25.64■■□□□ 1.7
PNKP-220ENST00000627232 FANCBQ8NB91 859 aa25.64■■□□□ 1.7
PNKP-220ENST00000627232 CLSTN2Q9H4D0 955 aa25.64■■□□□ 1.7
PNKP-220ENST00000627232 DACT1Q9NYF0 836 aa25.64■■□□□ 1.7
PNKP-220ENST00000627232 POLLQ9UGP5 575 aa25.64■■□□□ 1.7
PNKP-220ENST00000627232 ATP6V0A2Q9Y487 856 aa25.64■■□□□ 1.7
PNKP-220ENST00000627232 CEBPZQ03701 1054 aaKnown RBP25.63■■□□□ 1.69
PNKP-220ENST00000627232 TRIM29Q14134 588 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 RBM43Q6ZSC3 357 aaKnown RBP25.63■■□□□ 1.69
PNKP-220ENST00000627232 ENAHQ8N8S7 591 aaPredicted RBP25.63■■□□□ 1.69
PNKP-220ENST00000627232 TBC1D22AQ8WUA7 517 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 SLC26A6Q9BXS9 759 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 MKRN1Q9UHC7 482 aaKnown RBP25.63■■□□□ 1.69
PNKP-220ENST00000627232 MROH7-TTC4A0A0A0MT08 1334 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 CDK5RAP2Q96SN8 1893 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 MYH6P13533 1939 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 SMIM22K7EJ46 135 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 PDE6BP35913 854 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 PDE4BQ07343 736 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 FAM43AQ8N2R8 423 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 PDLIM2Q96JY6 352 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 AIFM3Q96NN9 605 aa25.63■■□□□ 1.69
PNKP-220ENST00000627232 KIF28PB7ZC32 967 aa25.62■■□□□ 1.69
PNKP-220ENST00000627232 CALM1P0DP23 149 aa25.62■■□□□ 1.69
PNKP-220ENST00000627232 CALM2P0DP24 149 aa25.62■■□□□ 1.69
PNKP-220ENST00000627232 CALM3P0DP25 149 aa25.62■■□□□ 1.69
PNKP-220ENST00000627232 SRGNP10124 158 aa25.62■■□□□ 1.69
PNKP-220ENST00000627232 FTOQ9C0B1 505 aaKnown RBP eCLIP25.62■■□□□ 1.69
PNKP-220ENST00000627232 TNMDQ9H2S6 317 aa25.62■■□□□ 1.69
PNKP-220ENST00000627232 FAM205AQ6ZU69 1335 aa25.62■■□□□ 1.69
PNKP-220ENST00000627232 ROBO3Q96MS0 1386 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 DEXIO95424 95 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 CCDC192P0DO97 292 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 ALDH1B1P30837 517 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 USP5P45974 858 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 IFIT1BQ5T764 474 aaKnown RBP25.61■■□□□ 1.69
PNKP-220ENST00000627232 NBPF11Q86T75 865 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 SLF2Q8IX21 1173 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 CRACR2BQ8N4Y2 399 aaPredicted RBP25.61■■□□□ 1.69
PNKP-220ENST00000627232 LINC00301Q8NCQ3 95 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 RNF214Q8ND24 703 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 KCNG4Q8TDN1 519 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 GJB4Q9NTQ9 266 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 PARP3Q9Y6F1 533 aa25.61■■□□□ 1.69
PNKP-220ENST00000627232 COL11A2P13942 1736 aaPredicted RBP25.61■■□□□ 1.69
PNKP-220ENST00000627232 C6orf229H3BNL8 230 aa25.6■■□□□ 1.69
PNKP-220ENST00000627232 DDAH1O94760 285 aa25.6■■□□□ 1.69
PNKP-220ENST00000627232 POLR3DP05423 398 aaPredicted RBP25.6■■□□□ 1.69
PNKP-220ENST00000627232 U2AF2P26368 475 aaKnown RBP eCLIP25.6■■□□□ 1.694e-8■□□□□ 9.6
PNKP-220ENST00000627232 GRIK5Q16478 980 aa25.6■■□□□ 1.69
PNKP-220ENST00000627232 C12orf60Q5U649 245 aa25.6■■□□□ 1.69
PNKP-220ENST00000627232 CATIPQ7Z7H3 387 aa25.6■■□□□ 1.69
PNKP-220ENST00000627232 CCAR1Q8IX12 1150 aaKnown RBP25.6■■□□□ 1.69
PNKP-220ENST00000627232 TRIM44Q96DX7 344 aaPredicted RBP25.6■■□□□ 1.69
PNKP-220ENST00000627232 RBM28Q9NW13 759 aaKnown RBP25.6■■□□□ 1.69
PNKP-220ENST00000627232 MCM9Q9NXL9 1143 aa25.6■■□□□ 1.69
PNKP-220ENST00000627232 A0A1W2PQ27 194 aa25.59■■□□□ 1.69
PNKP-220ENST00000627232 A0A1W2PQ64 194 aa25.59■■□□□ 1.69
PNKP-220ENST00000627232 A0A1W2PQD8 194 aa25.59■■□□□ 1.69
PNKP-220ENST00000627232 NR1I2O75469 434 aa25.59■■□□□ 1.69
PNKP-220ENST00000627232 STK38Q15208 465 aa25.59■■□□□ 1.69
PNKP-220ENST00000627232 ADALQ6DHV7 355 aa25.59■■□□□ 1.69
PNKP-220ENST00000627232 AMOTL1Q8IY63 956 aa25.59■■□□□ 1.69
PNKP-220ENST00000627232 SH3RF3Q8TEJ3 882 aaPredicted RBP25.59■■□□□ 1.69
PNKP-220ENST00000627232 NUP133Q8WUM0 1156 aa25.59■■□□□ 1.69
PNKP-220ENST00000627232 FAM163AQ96GL9 167 aaPredicted RBP25.59■■□□□ 1.69
PNKP-220ENST00000627232 RTFDC1Q9BY42 306 aaPredicted RBP25.59■■□□□ 1.69
PNKP-220ENST00000627232 PRDM1O75626 825 aa25.58■■□□□ 1.69
PNKP-220ENST00000627232 CYP2D6P10635 497 aa25.58■■□□□ 1.69
PNKP-220ENST00000627232 PLCG2P16885 1265 aa25.58■■□□□ 1.69
PNKP-220ENST00000627232 ME1P48163 572 aa25.58■■□□□ 1.69
PNKP-220ENST00000627232 DIXDC1Q155Q3 683 aa25.58■■□□□ 1.69
PNKP-220ENST00000627232 CCDC73Q6ZRK6 1079 aa25.58■■□□□ 1.69
PNKP-220ENST00000627232 RNF26Q9BY78 433 aaPredicted RBP25.58■■□□□ 1.69
PNKP-220ENST00000627232 COA1Q9GZY4 146 aa25.58■■□□□ 1.69
PNKP-220ENST00000627232 GPR75-ASB3A0A0A6YYF3 556 aa25.58■■□□□ 1.68
PNKP-220ENST00000627232 CTAGE5O15320 804 aa25.58■■□□□ 1.68
PNKP-220ENST00000627232 MMP10P09238 476 aa25.58■■□□□ 1.68
PNKP-220ENST00000627232 ANO1Q5XXA6 986 aa25.58■■□□□ 1.68
PNKP-220ENST00000627232 CLIC4Q9Y696 253 aa25.58■■□□□ 1.68
PNKP-220ENST00000627232 DDX60LQ5H9U9 1706 aaKnown RBP25.57■■□□□ 1.68
PNKP-220ENST00000627232 USP17L8P0C7I0 530 aa25.57■■□□□ 1.68
PNKP-220ENST00000627232 PCDHA7Q9UN72 937 aa25.57■■□□□ 1.68
PNKP-220ENST00000627232 SUGT1Q9Y2Z0 365 aa25.57■■□□□ 1.68
PNKP-220ENST00000627232 GAKO14976 1311 aa25.56■■□□□ 1.68
PNKP-220ENST00000627232 QSER1Q2KHR3 1735 aa25.56■■□□□ 1.68
PNKP-220ENST00000627232 SPTLC2O15270 562 aa25.56■■□□□ 1.68
PNKP-220ENST00000627232 FAM160A1Q05DH4 1040 aa25.56■■□□□ 1.68
PNKP-220ENST00000627232 GNL2Q13823 731 aaKnown RBP25.56■■□□□ 1.68
PNKP-220ENST00000627232 SF3A1Q15459 793 aaKnown RBP25.56■■□□□ 1.68
PNKP-220ENST00000627232 CCDC178Q5BJE1 867 aa25.56■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms