RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 FANCGO15287 622 aa5.93□□□□□ -1.46
SCN1A-208ENST00000625916 TRIM37O94972 964 aa5.93□□□□□ -1.46
SCN1A-208ENST00000625916 MAPK1P28482 360 aa5.93□□□□□ -1.46
SCN1A-208ENST00000625916 ENOX2Q16206 610 aaKnown RBP5.93□□□□□ -1.46
SCN1A-208ENST00000625916 NKPD1Q17RQ9 610 aa5.93□□□□□ -1.46
SCN1A-208ENST00000625916 LLGL2Q6P1M3 1020 aa5.93□□□□□ -1.46
SCN1A-208ENST00000625916 UBE3DQ7Z6J8 389 aa5.93□□□□□ -1.46
SCN1A-208ENST00000625916 C3orf58Q8NDZ4 430 aa5.93□□□□□ -1.46
SCN1A-208ENST00000625916 ELMO3Q96BJ8 720 aa5.93□□□□□ -1.46
SCN1A-208ENST00000625916 PRDM5Q9NQX1 630 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-208ENST00000625916 CACNA2D2Q9NY47 1150 aa5.93□□□□□ -1.46
SCN1A-208ENST00000625916 PCDHA4Q9UN74 947 aa5.93□□□□□ -1.46
SCN1A-208ENST00000625916 ENC1O14682 589 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 FBXO24O75426 580 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 PAGE1O75459 146 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 BMP6P22004 513 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 NTF4P34130 210 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 AFMP43652 599 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 CLCN7P51798 805 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 MESP2Q0VG99 397 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 DSC3Q14574 896 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 LRRC14Q15048 493 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 FBLN7Q53RD9 439 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 ZBTB37Q5TC79 503 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 KCT2Q8NC54 265 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 FOXQ1Q9C009 403 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.92□□□□□ -1.46
SCN1A-208ENST00000625916 CTNND2Q9UQB3 1225 aa5.92□□□□□ -1.46
SCN1A-208ENST00000625916 FAM155AB1AL88 458 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-208ENST00000625916 EOMESO95936 686 aa5.91□□□□□ -1.46
SCN1A-208ENST00000625916 ARMCX6Q7L4S7 300 aa5.91□□□□□ -1.46
SCN1A-208ENST00000625916 ZNF507Q8TCN5 953 aa5.91□□□□□ -1.46
SCN1A-208ENST00000625916 SRCIN1Q9C0H9 1055 aa5.91□□□□□ -1.46
SCN1A-208ENST00000625916 PPM1HQ9ULR3 514 aa5.91□□□□□ -1.46
SCN1A-208ENST00000625916 MAPK8IP1Q9UQF2 711 aa5.91□□□□□ -1.46
SCN1A-208ENST00000625916 PITPNM2Q9BZ72 1349 aa5.91□□□□□ -1.46
SCN1A-208ENST00000625916 ZNF503-AS2A6NEH8 195 aa5.9□□□□□ -1.46
SCN1A-208ENST00000625916 TREHO43280 583 aa5.9□□□□□ -1.46
SCN1A-208ENST00000625916 LRIG2O94898 1065 aa5.9□□□□□ -1.46
SCN1A-208ENST00000625916 MAPK8P45983 427 aa5.9□□□□□ -1.46
SCN1A-208ENST00000625916 RING1Q06587 406 aa5.9□□□□□ -1.46
SCN1A-208ENST00000625916 SPOCD1Q6ZMY3 1216 aa5.9□□□□□ -1.46
SCN1A-208ENST00000625916 LIN37Q96GY3 246 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-208ENST00000625916 CARS2Q9HA77 564 aaKnown RBP5.9□□□□□ -1.46
SCN1A-208ENST00000625916 LMCD1Q9NZU5 365 aa5.9□□□□□ -1.46
SCN1A-208ENST00000625916 TPX2Q9ULW0 747 aaKnown RBP5.9□□□□□ -1.46
SCN1A-208ENST00000625916 PRAMEF27A3QJZ7 478 aa5.89□□□□□ -1.47
SCN1A-208ENST00000625916 RAP1GAPP47736 663 aa5.89□□□□□ -1.47
SCN1A-208ENST00000625916 FYB2Q5VWT5 728 aa5.89□□□□□ -1.47
SCN1A-208ENST00000625916 MPZL3Q6UWV2 235 aa5.89□□□□□ -1.47
SCN1A-208ENST00000625916 CYFIP1Q7L576 1253 aa5.89□□□□□ -1.47
SCN1A-208ENST00000625916 BHLHE22Q8NFJ8 381 aaPredicted RBP5.89□□□□□ -1.47
SCN1A-208ENST00000625916 FBF1Q8TES7 1133 aa5.89□□□□□ -1.47
SCN1A-208ENST00000625916 KIRREL1Q96J84 757 aa5.89□□□□□ -1.47
SCN1A-208ENST00000625916 HSPA12BQ96MM6 686 aa5.89□□□□□ -1.47
SCN1A-208ENST00000625916 CYP8B1Q9UNU6 501 aa5.89□□□□□ -1.47
SCN1A-208ENST00000625916 GLI1P08151 1106 aa5.88□□□□□ -1.47
SCN1A-208ENST00000625916 SFRP5Q5T4F7 317 aa5.88□□□□□ -1.47
SCN1A-208ENST00000625916 RASIP1Q5U651 963 aa5.88□□□□□ -1.47
SCN1A-208ENST00000625916 CDKAL1Q5VV42 579 aa5.88□□□□□ -1.47
SCN1A-208ENST00000625916 SCARA3Q6AZY7 606 aa5.88□□□□□ -1.47
SCN1A-208ENST00000625916 TOX2Q96NM4 488 aa5.88□□□□□ -1.47
SCN1A-208ENST00000625916 PPP1R16BQ96T49 567 aa5.88□□□□□ -1.47
SCN1A-208ENST00000625916 MIPEPQ99797 713 aa5.88□□□□□ -1.47
SCN1A-208ENST00000625916 OSBPL7Q9BZF2 842 aa5.88□□□□□ -1.47
SCN1A-208ENST00000625916 ATP13A1Q9HD20 1204 aa5.88□□□□□ -1.47
SCN1A-208ENST00000625916 PRR33A8MZF0 331 aa5.87□□□□□ -1.47
SCN1A-208ENST00000625916 GIPC1O14908 333 aa5.87□□□□□ -1.47
SCN1A-208ENST00000625916 SLITRK5O94991 958 aa5.87□□□□□ -1.47
SCN1A-208ENST00000625916 INPP5AQ14642 412 aa5.87□□□□□ -1.47
SCN1A-208ENST00000625916 TMEM67Q5HYA8 995 aa5.87□□□□□ -1.47
SCN1A-208ENST00000625916 PCNX4Q63HM2 1172 aa5.87□□□□□ -1.47
SCN1A-208ENST00000625916 LRFN4Q6PJG9 635 aa5.87□□□□□ -1.47
SCN1A-208ENST00000625916 HDXQ7Z353 690 aa5.87□□□□□ -1.47
SCN1A-208ENST00000625916 MFSD4AQ8N468 514 aa5.87□□□□□ -1.47
SCN1A-208ENST00000625916 GNEQ9Y223 722 aaKnown RBP5.87□□□□□ -1.47
SCN1A-208ENST00000625916 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-208ENST00000625916 H3BS24 57 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 CELA3AP09093 270 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 ETF1P62495 437 aaKnown RBP5.86□□□□□ -1.47
SCN1A-208ENST00000625916 FGD1P98174 961 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 ATP2B2Q01814 1243 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 KRTAP19-4Q3LI73 84 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 LCE4AQ5TA78 99 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 ALG1LQ6GMV1 187 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 PRR23BQ6ZRT6 265 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 SYDE1Q6ZW31 735 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-208ENST00000625916 NPAS4Q8IUM7 802 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 ZSCAN29Q8IWY8 852 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-208ENST00000625916 ZSCAN18Q8TBC5 510 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-208ENST00000625916 PLPPR2Q96GM1 343 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 SETDB2Q96T68 719 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 KRTAP4-9Q9BYQ8 210 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 FBRSQ9HAH7 460 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 SEMA3GQ9NS98 782 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 SPG7Q9UQ90 795 aa5.86□□□□□ -1.47
SCN1A-208ENST00000625916 TSPAN15O95858 294 aa5.85□□□□□ -1.47
SCN1A-208ENST00000625916 CBX7O95931 251 aa5.85□□□□□ -1.47
SCN1A-208ENST00000625916 GDNFP39905 211 aa5.85□□□□□ -1.47
SCN1A-208ENST00000625916 SLBPQ14493 270 aaKnown RBP eCLIP5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms