RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 PHACTR3Q96KR7 559 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 LZTFL1Q9NQ48 299 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 CTAGE9A4FU28 777 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 PPFIA2O75334 1257 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 RASSF9O75901 435 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 ZKSCAN1P17029 563 aaPredicted RBP8.94□□□□□ -0.98
VPS11-209ENST00000622309 NEXNQ0ZGT2 675 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 SF3B2Q13435 895 aaKnown RBP8.94□□□□□ -0.98
VPS11-209ENST00000622309 TBC1D25Q3MII6 688 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 HSP90AB2PQ58FF8 381 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 CCDC13Q8IYE1 715 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 UHMK1Q8TAS1 419 aaKnown RBP8.94□□□□□ -0.98
VPS11-209ENST00000622309 CXorf38Q8TB03 319 aa8.94□□□□□ -0.98
VPS11-209ENST00000622309 BIN1O00499 593 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 STX10O60499 249 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 CCDC175P0C221 793 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 ME1P48163 572 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 TLDC1Q6P9B6 456 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 TOGARAM2Q6ZUX3 1019 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 MAB21L3Q8N8X9 362 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 SMARCC2Q8TAQ2 1214 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 COG3Q96JB2 828 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 BPIFA3Q9BQP9 254 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 DESI2Q9BSY9 194 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 LSG1Q9H089 658 aaKnown RBP8.93□□□□□ -0.98
VPS11-209ENST00000622309 MBIPQ9NS73 344 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 SPG7Q9UQ90 795 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 FAM83GA6ND36 823 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 SH3BP5O60239 455 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 ATF3P18847 181 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 ST3GAL1Q11201 340 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 LONRF3Q496Y0 759 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 ZNF569Q5MCW4 686 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 CDCA2Q69YH5 1023 aaPredicted RBP8.93□□□□□ -0.98
VPS11-209ENST00000622309 PRPF40BQ6NWY9 871 aaKnown RBP8.93□□□□□ -0.98
VPS11-209ENST00000622309 C8orf58Q8NAV2 365 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 IRX2Q9BZI1 471 aaPredicted RBP8.93□□□□□ -0.98
VPS11-209ENST00000622309 TSPYL2Q9H2G4 693 aaPredicted RBP8.93□□□□□ -0.98
VPS11-209ENST00000622309 GOLPH3LQ9H4A5 285 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 ANAPC4Q9UJX5 808 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 CCDC61Q9Y6R9 512 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 PLEKHG1Q9ULL1 1385 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 MYSM1Q5VVJ2 828 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 WDR93Q6P2C0 686 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 MAGEC3Q8TD91 643 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 COG1Q8WTW3 980 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 GDAP1L1Q96MZ0 367 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 ZSWIM6Q9HCJ5 1215 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 GOPCQ9HD26 462 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 FRMD4BQ9Y2L6 1034 aa8.93□□□□□ -0.98
VPS11-209ENST00000622309 PRR36Q9H6K5 1346 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 KNDC1Q76NI1 1749 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 THEMIS2Q5TEJ8 643 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 CYB5D1Q6P9G0 228 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 YTHDF3Q7Z739 585 aaKnown RBP8.92□□□□□ -0.98
VPS11-209ENST00000622309 HOOK2Q96ED9 719 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 CENPOQ9BU64 300 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 YIPF3Q9GZM5 350 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 MAF1Q9H063 256 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 G3BP2Q9UN86 482 aaKnown RBP8.92□□□□□ -0.98
VPS11-209ENST00000622309 ADGRL3Q9HAR2 1447 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 CARNS1A5YM72 827 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 ZEB2O60315 1214 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 PYGLP06737 847 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 ATP1A3P13637 1013 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 RANBP1P43487 201 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 STK3Q13188 491 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 WHAMMP3Q1A5X7 153 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 ADCK5Q3MIX3 580 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 CCDC121Q6ZUS5 278 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 VSTM4Q8IW00 320 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 TM6SF1Q9BZW5 370 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 C19orf44Q9H6X5 657 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 KIAA1468Q9P260 1216 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 TBX22Q9Y458 520 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 ROBO2Q9HCK4 1378 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 PFKFB2O60825 505 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 IFFO1Q0D2I5 559 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 MTX1Q13505 466 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 HHATQ5VTY9 493 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 SLC30A9Q6PML9 568 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 STAP2Q9UGK3 403 aa8.92□□□□□ -0.98
VPS11-209ENST00000622309 BUB1BO60566 1050 aaPredicted RBP8.91□□□□□ -0.98
VPS11-209ENST00000622309 CDKL5O76039 1030 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 ABCD1P33897 745 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 IFT88Q13099 833 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 LAMB3Q13751 1172 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 ANKRD1Q15327 319 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 SLC4A10Q6U841 1118 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 CNTROBQ8N137 903 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 RUFY2Q8WXA3 655 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 SPAG5Q96R06 1193 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 RUFY1Q96T51 708 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 GRIN2DO15399 1336 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 AFF2P51816 1311 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 SALL3Q9BXA9 1300 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 GOLGA8KD6RF30 607 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 FCHSD2O94868 740 aa8.91□□□□□ -0.98
VPS11-209ENST00000622309 RTN3O95197 1032 aaPredicted RBP8.91□□□□□ -0.98
VPS11-209ENST00000622309 SLC3A2P08195 630 aaKnown RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms