RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 CYP2D6P10635 497 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 LMOD1P29536 600 aaPredicted RBP9.52□□□□□ -0.89
CPNE3-209ENST00000620393 CACNB3P54284 484 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 PICALMQ13492 652 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 KIF4BQ2VIQ3 1234 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 ADCK5Q3MIX3 580 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 TBC1D10BQ4KMP7 808 aaPredicted RBP9.52□□□□□ -0.89
CPNE3-209ENST00000620393 AKNAD1Q5T1N1 836 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 STOX1Q6ZVD7 989 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 TTC6Q86TZ1 520 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 ZFPM1Q8IX07 1006 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 AMOTL1Q8IY63 956 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 JAKMIP1Q96N16 626 aaKnown RBP9.52□□□□□ -0.89
CPNE3-209ENST00000620393 NEK1Q96PY6 1258 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 OSBPL5Q9H0X9 879 aaPredicted RBP9.52□□□□□ -0.89
CPNE3-209ENST00000620393 DHX36Q9H2U1 1008 aaKnown RBP9.52□□□□□ -0.89
CPNE3-209ENST00000620393 SAP30BPQ9UHR5 308 aaKnown RBP9.52□□□□□ -0.89
CPNE3-209ENST00000620393 DOCK2Q92608 1830 aa9.52□□□□□ -0.89
CPNE3-209ENST00000620393 CLRN2A0PK11 232 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 POTEFA5A3E0 1075 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 SMIM22K7EJ46 135 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 HMGB1P09429 215 aaKnown RBP9.51□□□□□ -0.89
CPNE3-209ENST00000620393 POTEJP0CG39 1038 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 PCP11498 1178 aaKnown RBP9.51□□□□□ -0.89
CPNE3-209ENST00000620393 PLCD1P51178 756 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 HIRAP54198 1017 aaPredicted RBP9.51□□□□□ -0.89
CPNE3-209ENST00000620393 CTDSPL2Q05D32 466 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 TCP10Q12799 353 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 MFSD6Q6ZSS7 791 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 FAM83AQ86UY5 434 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 TBC1D10CQ8IV04 446 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 FOXP4Q8IVH2 680 aaPredicted RBP9.51□□□□□ -0.89
CPNE3-209ENST00000620393 STAG1Q8WVM7 1258 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 FAM151AQ8WW52 585 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 NBPF3Q9H094 633 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 RNF41Q9H4P4 317 aaPredicted RBP9.51□□□□□ -0.89
CPNE3-209ENST00000620393 INCENPQ9NQS7 918 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 ADARB2Q9NS39 739 aaKnown RBP9.51□□□□□ -0.89
CPNE3-209ENST00000620393 COLQQ9Y215 455 aaPredicted RBP9.51□□□□□ -0.89
CPNE3-209ENST00000620393 CYP46A1Q9Y6A2 500 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 TACC3Q9Y6A5 838 aa9.51□□□□□ -0.89
CPNE3-209ENST00000620393 TCP10L2B9ZVM9 353 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 CASTP20810 708 aaKnown RBP9.5□□□□□ -0.89
CPNE3-209ENST00000620393 NT5C2P49902 561 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 NEK4P51957 841 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 EXOSC10Q01780 885 aaKnown RBP9.5□□□□□ -0.89
CPNE3-209ENST00000620393 PDE4BQ07343 736 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 TRDNQ13061 729 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 BLOC1S2Q6QNY1 142 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 RUFY3Q7L099 469 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 DHX32Q7L7V1 743 aaKnown RBP9.5□□□□□ -0.89
CPNE3-209ENST00000620393 SH3BP5LQ7L8J4 393 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 NCOA7Q8NI08 942 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 TRPM4Q8TD43 1214 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 KRT23Q9C075 422 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 ALDH8A1Q9H2A2 487 aaPredicted RBP9.5□□□□□ -0.89
CPNE3-209ENST00000620393 CNNM2Q9H8M5 875 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 VEZTQ9HBM0 779 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 PI4KBQ9UBF8 816 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 HACL1Q9UJ83 578 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 TAOK2Q9UL54 1235 aa9.5□□□□□ -0.89
CPNE3-209ENST00000620393 MYO5AQ9Y4I1 1855 aaKnown RBP9.49□□□□□ -0.89
CPNE3-209ENST00000620393 IQCA1LA6NCM1 817 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 DDTLA6NHG4 134 aaPredicted RBP9.49□□□□□ -0.89
CPNE3-209ENST00000620393 POTECB2RU33 542 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 ORC4O43929 436 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 HLA-DOAP06340 250 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 RPS6KB1P23443 525 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 TNNI2P48788 182 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 GABPAQ06546 454 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 RASA3Q14644 834 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 USP50Q70EL3 339 aaPredicted RBP9.49□□□□□ -0.89
CPNE3-209ENST00000620393 METTL16Q86W50 562 aaKnown RBP9.49□□□□□ -0.89
CPNE3-209ENST00000620393 ZSCAN29Q8IWY8 852 aaPredicted RBP9.49□□□□□ -0.89
CPNE3-209ENST00000620393 STK11IPQ8N1F8 1099 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 SNX21Q969T3 373 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 DYNLL2Q96FJ2 89 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 UPF3BQ9BZI7 483 aaKnown RBP9.49□□□□□ -0.89
CPNE3-209ENST00000620393 EHD4Q9H223 541 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 ZNF287Q9HBT7 754 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 SCUBE2Q9NQ36 999 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 PDRG1Q9NUG6 133 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 ZSWIM5Q9P217 1185 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 PGAP2Q9UHJ9 254 aa9.49□□□□□ -0.89
CPNE3-209ENST00000620393 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.49□□□□□ -0.89
CPNE3-209ENST00000620393 AK9Q5TCS8 1911 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 B4E1Z4 1266 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 ST18O60284 1047 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 CPA1P15085 419 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 MCM5P33992 734 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 EPHX2P34913 555 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 ANP32AP39687 249 aaKnown RBP9.48□□□□□ -0.89
CPNE3-209ENST00000620393 CDK8P49336 464 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 PSEN1P49768 467 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 TNFAIP1Q13829 316 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 COL9A3Q14050 684 aaPredicted RBP9.48□□□□□ -0.89
CPNE3-209ENST00000620393 SLC4A8Q2Y0W8 1093 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 ANGEL2Q5VTE6 544 aaKnown RBP9.48□□□□□ -0.89
CPNE3-209ENST00000620393 C16orf86Q6ZW13 317 aa9.48□□□□□ -0.89
CPNE3-209ENST00000620393 RALYLQ86SE5 291 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms