RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 TEX11Q8IYF3 940 aa30.66■■■□□ 2.5
PTPRF-216ENST00000617451 TMEM57Q8N5G2 664 aa30.66■■■□□ 2.5
PTPRF-216ENST00000617451 PROCA1Q8NCQ7 364 aaPredicted RBP30.66■■■□□ 2.5
PTPRF-216ENST00000617451 GPR108Q9NPR9 543 aa30.66■■■□□ 2.5
PTPRF-216ENST00000617451 TNPO2O14787 897 aaKnown RBP30.65■■■□□ 2.5
PTPRF-216ENST00000617451 ADCY3O60266 1144 aa30.65■■■□□ 2.5
PTPRF-216ENST00000617451 FXR1P51114 621 aaKnown RBP eCLIP30.65■■■□□ 2.5
PTPRF-216ENST00000617451 SPP2Q13103 211 aa30.65■■■□□ 2.5
PTPRF-216ENST00000617451 POLA2Q14181 598 aa30.65■■■□□ 2.5
PTPRF-216ENST00000617451 ZNF280CQ8ND82 737 aa30.65■■■□□ 2.5
PTPRF-216ENST00000617451 TBC1D2Q9BYX2 928 aa30.65■■■□□ 2.5
PTPRF-216ENST00000617451 CAP2P40123 477 aa30.64■■■□□ 2.5
PTPRF-216ENST00000617451 IRF5Q13568 498 aa30.64■■■□□ 2.5
PTPRF-216ENST00000617451 RRP1BQ14684 758 aaKnown RBP30.64■■■□□ 2.5
PTPRF-216ENST00000617451 ANKRD13CQ8N6S4 541 aa30.64■■■□□ 2.5
PTPRF-216ENST00000617451 SH3RF3Q8TEJ3 882 aaPredicted RBP30.64■■■□□ 2.5
PTPRF-216ENST00000617451 PNMA3Q9UL41 463 aa30.64■■■□□ 2.5
PTPRF-216ENST00000617451 TNNI3KQ59H18 835 aa30.63■■■□□ 2.49
PTPRF-216ENST00000617451 ZKSCAN2Q63HK3 967 aa30.63■■■□□ 2.49
PTPRF-216ENST00000617451 PXYLP1Q8TE99 480 aa30.63■■■□□ 2.49
PTPRF-216ENST00000617451 UNC93B1Q9H1C4 597 aa30.63■■■□□ 2.49
PTPRF-216ENST00000617451 SNRKQ9NRH2 765 aa30.63■■■□□ 2.49
PTPRF-216ENST00000617451 HERC5Q9UII4 1024 aaKnown RBP30.63■■■□□ 2.49
PTPRF-216ENST00000617451 FPGT-TNNI3KV9GXZ4 949 aa30.63■■■□□ 2.49
PTPRF-216ENST00000617451 RANBP2P49792 3224 aaKnown RBP30.63■■■□□ 2.49
PTPRF-216ENST00000617451 TRIOBPQ9H2D6 2365 aa30.62■■■□□ 2.49
PTPRF-216ENST00000617451 ELNP15502 786 aa30.62■■■□□ 2.49
PTPRF-216ENST00000617451 SSH3Q8TE77 659 aa30.62■■■□□ 2.49
PTPRF-216ENST00000617451 U2AF1L4Q8WU68 220 aaKnown RBP30.62■■■□□ 2.49
PTPRF-216ENST00000617451 NOL10Q9BSC4 688 aaKnown RBP30.62■■■□□ 2.49
PTPRF-216ENST00000617451 BAG3O95817 575 aa30.61■■■□□ 2.49
PTPRF-216ENST00000617451 ATP8B2P98198 1209 aa30.61■■■□□ 2.49
PTPRF-216ENST00000617451 FAM110CQ1W6H9 321 aa30.61■■■□□ 2.49
PTPRF-216ENST00000617451 TTC39AQ5SRH9 613 aa30.61■■■□□ 2.49
PTPRF-216ENST00000617451 NAA16Q6N069 864 aaPredicted RBP30.61■■■□□ 2.49
PTPRF-216ENST00000617451 DPF3Q92784 378 aa30.61■■■□□ 2.49
PTPRF-216ENST00000617451 DBNDD2Q9BQY9 259 aa30.61■■■□□ 2.49
PTPRF-216ENST00000617451 PI4KBQ9UBF8 816 aa30.61■■■□□ 2.49
PTPRF-216ENST00000617451 USP17L5A8MUK1 530 aa30.6■■■□□ 2.49
PTPRF-216ENST00000617451 HMGCS2P54868 508 aa30.6■■■□□ 2.49
PTPRF-216ENST00000617451 PPP4CP60510 307 aa30.6■■■□□ 2.49
PTPRF-216ENST00000617451 CCDC158Q5M9N0 1113 aa30.6■■■□□ 2.49
PTPRF-216ENST00000617451 COA7Q96BR5 231 aa30.6■■■□□ 2.49
PTPRF-216ENST00000617451 DHX36Q9H2U1 1008 aaKnown RBP30.6■■■□□ 2.49
PTPRF-216ENST00000617451 AATFQ9NY61 560 aaKnown RBP eCLIP30.6■■■□□ 2.49
PTPRF-216ENST00000617451 SGPL1O95470 568 aa30.59■■■□□ 2.49
PTPRF-216ENST00000617451 INHAP05111 366 aa30.59■■■□□ 2.49
PTPRF-216ENST00000617451 OS9Q13438 667 aaPredicted RBP30.59■■■□□ 2.49
PTPRF-216ENST00000617451 CYP2E1P05181 493 aaPredicted RBP30.58■■■□□ 2.49
PTPRF-216ENST00000617451 PLCG2P16885 1265 aa30.58■■■□□ 2.49
PTPRF-216ENST00000617451 GCLCP48506 637 aaPredicted RBP30.58■■■□□ 2.49
PTPRF-216ENST00000617451 PABPC4Q13310 644 aaKnown RBP eCLIP30.58■■■□□ 2.49
PTPRF-216ENST00000617451 SH3D19Q5HYK7 790 aa30.58■■■□□ 2.49
PTPRF-216ENST00000617451 ZNF512BQ96KM6 892 aaPredicted RBP30.58■■■□□ 2.49
PTPRF-216ENST00000617451 HTATIP2Q9BUP3 242 aa30.58■■■□□ 2.49
PTPRF-216ENST00000617451 LOC285556D6RIA3 1793 aa30.58■■■□□ 2.49
PTPRF-216ENST00000617451 DOCK3Q8IZD9 2030 aa30.57■■■□□ 2.49
PTPRF-216ENST00000617451 ATAD5Q96QE3 1844 aa30.57■■■□□ 2.48
PTPRF-216ENST00000617451 SURF6O75683 361 aaKnown RBP30.57■■■□□ 2.48
PTPRF-216ENST00000617451 ADGRA1Q86SQ6 560 aa30.57■■■□□ 2.48
PTPRF-216ENST00000617451 AS3MTQ9HBK9 375 aa30.57■■■□□ 2.48
PTPRF-216ENST00000617451 FARP2O94887 1054 aaPredicted RBP30.56■■■□□ 2.48
PTPRF-216ENST00000617451 TGFBRAP1Q8WUH2 860 aa30.56■■■□□ 2.48
PTPRF-216ENST00000617451 WDR18Q9BV38 432 aa30.56■■■□□ 2.48
PTPRF-216ENST00000617451 ASCC2Q9H1I8 757 aaPredicted RBP30.56■■■□□ 2.48
PTPRF-216ENST00000617451 IGSF3O75054 1194 aa30.55■■■□□ 2.48
PTPRF-216ENST00000617451 METTL16Q86W50 562 aaKnown RBP30.55■■■□□ 2.48
PTPRF-216ENST00000617451 MAPKAPK5Q8IW41 473 aa30.55■■■□□ 2.48
PTPRF-216ENST00000617451 C1orf115Q9H7X2 142 aa30.55■■■□□ 2.48
PTPRF-216ENST00000617451 NOP58Q9Y2X3 529 aaKnown RBP30.55■■■□□ 2.48
PTPRF-216ENST00000617451 SZT2Q5T011 3432 aa30.55■■■□□ 2.48
PTPRF-216ENST00000617451 FLT1P17948 1338 aa30.54■■■□□ 2.48
PTPRF-216ENST00000617451 CAPN2P17655 700 aa30.54■■■□□ 2.48
PTPRF-216ENST00000617451 CHRDL2Q6WN34 429 aa30.54■■■□□ 2.48
PTPRF-216ENST00000617451 FOXP4Q8IVH2 680 aaPredicted RBP30.54■■■□□ 2.48
PTPRF-216ENST00000617451 DNAJC18Q9H819 358 aa30.54■■■□□ 2.48
PTPRF-216ENST00000617451 PAK6Q9NQU5 681 aaPredicted RBP30.54■■■□□ 2.48
PTPRF-216ENST00000617451 TAOK2Q9UL54 1235 aa30.54■■■□□ 2.48
PTPRF-216ENST00000617451 SIPA1L1O43166 1804 aa30.54■■■□□ 2.48
PTPRF-216ENST00000617451 MAST2Q6P0Q8 1798 aa30.54■■■□□ 2.48
PTPRF-216ENST00000617451 ASNSP08243 561 aa30.53■■■□□ 2.48
PTPRF-216ENST00000617451 ZAP70P43403 619 aa30.53■■■□□ 2.48
PTPRF-216ENST00000617451 DEFB118Q96PH6 123 aa30.53■■■□□ 2.48
PTPRF-216ENST00000617451 BACE1P56817 501 aa30.52■■■□□ 2.48
PTPRF-216ENST00000617451 JAG1P78504 1218 aa30.52■■■□□ 2.48
PTPRF-216ENST00000617451 PIH1D3Q9NQM4 214 aaKnown RBP30.52■■■□□ 2.48
PTPRF-216ENST00000617451 DBNLQ9UJU6 430 aaKnown RBP30.52■■■□□ 2.48
PTPRF-216ENST00000617451 PALD1Q9ULE6 856 aa30.52■■■□□ 2.48
PTPRF-216ENST00000617451 ZBTB7BO15156 539 aaPredicted RBP30.51■■■□□ 2.47
PTPRF-216ENST00000617451 TFRCP02786 760 aaKnown RBP30.51■■■□□ 2.47
PTPRF-216ENST00000617451 MTMR2Q13614 643 aa30.51■■■□□ 2.47
PTPRF-216ENST00000617451 FTSJ3Q8IY81 847 aaKnown RBP30.51■■■□□ 2.47
PTPRF-216ENST00000617451 GJD2Q9UKL4 321 aa30.51■■■□□ 2.47
PTPRF-216ENST00000617451 CRISPLD2Q9H0B8 497 aa30.5■■■□□ 2.47
PTPRF-216ENST00000617451 MORF4L1Q9UBU8 362 aa30.5■■■□□ 2.47
PTPRF-216ENST00000617451 NR2E3Q9Y5X4 410 aa30.5■■■□□ 2.47
PTPRF-216ENST00000617451 CDK5RAP2Q96SN8 1893 aa30.49■■■□□ 2.47
PTPRF-216ENST00000617451 HOXA7P31268 230 aaPredicted RBP30.49■■■□□ 2.47
PTPRF-216ENST00000617451 ITPRIPQ8IWB1 547 aa30.49■■■□□ 2.47
PTPRF-216ENST00000617451 CRACR2BQ8N4Y2 399 aaPredicted RBP30.49■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms