RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 NSUN4Q96CB9 384 aaKnown RBP11.78□□□□□ -0.52
VRK3-224ENST00000601849 UNC93B1Q9H1C4 597 aa11.78□□□□□ -0.52
VRK3-224ENST00000601849 TMOD4Q9NZQ9 345 aa11.78□□□□□ -0.52
VRK3-224ENST00000601849 HMG20BQ9P0W2 317 aa11.78□□□□□ -0.52
VRK3-224ENST00000601849 PI4KBQ9UBF8 816 aa11.78□□□□□ -0.52
VRK3-224ENST00000601849 INHAP05111 366 aa11.77□□□□□ -0.53
VRK3-224ENST00000601849 CAP2P40123 477 aa11.77□□□□□ -0.53
VRK3-224ENST00000601849 RHBDL3P58872 404 aa11.77□□□□□ -0.53
VRK3-224ENST00000601849 OS9Q13438 667 aaPredicted RBP11.77□□□□□ -0.53
VRK3-224ENST00000601849 FAM110CQ1W6H9 321 aa11.77□□□□□ -0.53
VRK3-224ENST00000601849 ATF7IPQ6VMQ6 1270 aa11.77□□□□□ -0.53
VRK3-224ENST00000601849 CCAR1Q8IX12 1150 aaKnown RBP11.77□□□□□ -0.53
VRK3-224ENST00000601849 FRAT1Q92837 279 aaPredicted RBP11.77□□□□□ -0.53
VRK3-224ENST00000601849 SHISA4Q96DD7 197 aa11.77□□□□□ -0.53
VRK3-224ENST00000601849 DEFB118Q96PH6 123 aa11.77□□□□□ -0.53
VRK3-224ENST00000601849 DDX4Q9NQI0 724 aaKnown RBP11.77□□□□□ -0.53
VRK3-224ENST00000601849 ATRNL1Q5VV63 1379 aa11.77□□□□□ -0.53
VRK3-224ENST00000601849 MYH2Q9UKX2 1941 aa11.76□□□□□ -0.53
VRK3-224ENST00000601849 ASNSP08243 561 aa11.76□□□□□ -0.53
VRK3-224ENST00000601849 ELNP15502 786 aa11.76□□□□□ -0.53
VRK3-224ENST00000601849 TTC39AQ5SRH9 613 aa11.76□□□□□ -0.53
VRK3-224ENST00000601849 NAA16Q6N069 864 aaPredicted RBP11.76□□□□□ -0.53
VRK3-224ENST00000601849 NECAB2Q7Z6G3 386 aa11.76□□□□□ -0.53
VRK3-224ENST00000601849 FOXP4Q8IVH2 680 aaPredicted RBP11.76□□□□□ -0.53
VRK3-224ENST00000601849 CRACR2BQ8N4Y2 399 aaPredicted RBP11.76□□□□□ -0.53
VRK3-224ENST00000601849 GINM1Q9NU53 330 aa11.76□□□□□ -0.53
VRK3-224ENST00000601849 RBM27Q9P2N5 1060 aaKnown RBP11.76□□□□□ -0.53
VRK3-224ENST00000601849 A0A1W2PPC1 479 aa11.75□□□□□ -0.53
VRK3-224ENST00000601849 C19orf81C9J6K1 198 aa11.75□□□□□ -0.53
VRK3-224ENST00000601849 ARID4AP29374 1257 aaPredicted RBP11.75□□□□□ -0.53
VRK3-224ENST00000601849 HMGCS2P54868 508 aa11.75□□□□□ -0.53
VRK3-224ENST00000601849 IRX3P78415 501 aaPredicted RBP11.75□□□□□ -0.53
VRK3-224ENST00000601849 TBC1D9Q6ZT07 1266 aa11.75□□□□□ -0.53
VRK3-224ENST00000601849 ANKLE1Q8NAG6 615 aa11.75□□□□□ -0.53
VRK3-224ENST00000601849 HMX1Q9NP08 348 aaPredicted RBP11.75□□□□□ -0.53
VRK3-224ENST00000601849 DOCK2Q92608 1830 aa11.74□□□□□ -0.53
VRK3-224ENST00000601849 CCER2I3L3R5 266 aa11.74□□□□□ -0.53
VRK3-224ENST00000601849 ZBTB7BO15156 539 aaPredicted RBP11.74□□□□□ -0.53
VRK3-224ENST00000601849 HMGCRP04035 888 aa11.74□□□□□ -0.53
VRK3-224ENST00000601849 HLA-DOAP06340 250 aa11.74□□□□□ -0.53
VRK3-224ENST00000601849 TREML2Q5T2D2 321 aa11.74□□□□□ -0.53
VRK3-224ENST00000601849 UBE2Q1Q7Z7E8 422 aa11.74□□□□□ -0.53
VRK3-224ENST00000601849 CERS3Q8IU89 383 aa11.74□□□□□ -0.53
VRK3-224ENST00000601849 TRMT44Q8IYL2 757 aaKnown RBP11.74□□□□□ -0.53
VRK3-224ENST00000601849 CWC22Q9HCG8 908 aaKnown RBP11.74□□□□□ -0.53
VRK3-224ENST00000601849 GPR108Q9NPR9 543 aa11.74□□□□□ -0.53
VRK3-224ENST00000601849 PAK6Q9NQU5 681 aaPredicted RBP11.74□□□□□ -0.53
VRK3-224ENST00000601849 RPTORQ8N122 1335 aa11.74□□□□□ -0.53
VRK3-224ENST00000601849 RFX7Q2KHR2 1363 aa11.74□□□□□ -0.53
VRK3-224ENST00000601849 ZSWIM8A7E2V4 1837 aa11.74□□□□□ -0.53
VRK3-224ENST00000601849 FAM196BA6NMK8 535 aa11.73□□□□□ -0.53
VRK3-224ENST00000601849 USP17L10C9JJH3 530 aa11.73□□□□□ -0.53
VRK3-224ENST00000601849 COL2A1P02458 1487 aaPredicted RBP11.73□□□□□ -0.53
VRK3-224ENST00000601849 BACE1P56817 501 aa11.73□□□□□ -0.53
VRK3-224ENST00000601849 PDE3AQ14432 1141 aa11.73□□□□□ -0.53
VRK3-224ENST00000601849 SH3D19Q5HYK7 790 aa11.73□□□□□ -0.53
VRK3-224ENST00000601849 CCDC84Q86UT8 332 aaPredicted RBP11.73□□□□□ -0.53
VRK3-224ENST00000601849 GPRC5AQ8NFJ5 357 aa11.73□□□□□ -0.53
VRK3-224ENST00000601849 SH3RF3Q8TEJ3 882 aaPredicted RBP11.73□□□□□ -0.53
VRK3-224ENST00000601849 GTF3C2Q8WUA4 911 aaPredicted RBP11.73□□□□□ -0.53
VRK3-224ENST00000601849 PAWRQ96IZ0 340 aaKnown RBP11.73□□□□□ -0.53
VRK3-224ENST00000601849 WDR18Q9BV38 432 aa11.73□□□□□ -0.53
VRK3-224ENST00000601849 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.73□□□□□ -0.53
VRK3-224ENST00000601849 ASCC2Q9H1I8 757 aaPredicted RBP11.73□□□□□ -0.53
VRK3-224ENST00000601849 AATFQ9NY61 560 aaKnown RBP eCLIP11.73□□□□□ -0.53
VRK3-224ENST00000601849 SURF6O75683 361 aaKnown RBP11.72□□□□□ -0.53
VRK3-224ENST00000601849 HOXA7P31268 230 aaPredicted RBP11.72□□□□□ -0.53
VRK3-224ENST00000601849 MCAMP43121 646 aa11.72□□□□□ -0.53
VRK3-224ENST00000601849 PPP4CP60510 307 aa11.72□□□□□ -0.53
VRK3-224ENST00000601849 ZKSCAN2Q63HK3 967 aa11.72□□□□□ -0.53
VRK3-224ENST00000601849 TGFBRAP1Q8WUH2 860 aa11.72□□□□□ -0.53
VRK3-224ENST00000601849 CLUAP1Q96AJ1 413 aa11.72□□□□□ -0.53
VRK3-224ENST00000601849 NUDT12Q9BQG2 462 aa11.72□□□□□ -0.53
VRK3-224ENST00000601849 NBPF3Q9H094 633 aa11.72□□□□□ -0.53
VRK3-224ENST00000601849 CRISPLD2Q9H0B8 497 aa11.72□□□□□ -0.53
VRK3-224ENST00000601849 SZT2Q5T011 3432 aa11.72□□□□□ -0.53
VRK3-224ENST00000601849 PNMA6EA0A0J9YXQ4 647 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 GLRX3O76003 335 aaKnown RBP11.71□□□□□ -0.53
VRK3-224ENST00000601849 SLURP2P0DP57 97 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 TRIM27P14373 513 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 MAPK4P31152 587 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 MTMR2Q13614 643 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 TNNI3KQ59H18 835 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 TMED8Q6PL24 325 aaPredicted RBP11.71□□□□□ -0.53
VRK3-224ENST00000601849 PI16Q6UXB8 463 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 MAPKAPK5Q8IW41 473 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 FTSJ3Q8IY81 847 aaKnown RBP11.71□□□□□ -0.53
VRK3-224ENST00000601849 ZNF384Q8TF68 577 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 SOCS4Q8WXH5 440 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 ZNF512BQ96KM6 892 aaPredicted RBP11.71□□□□□ -0.53
VRK3-224ENST00000601849 SNRKQ9NRH2 765 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.71□□□□□ -0.53
VRK3-224ENST00000601849 MORF4L1Q9UBU8 362 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 FPGT-TNNI3KV9GXZ4 949 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 MGAMO43451 1857 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 DOCK1Q14185 1865 aa11.71□□□□□ -0.53
VRK3-224ENST00000601849 XRCC5P13010 732 aaKnown RBP11.7□□□□□ -0.54
VRK3-224ENST00000601849 CYP2B6P20813 491 aa11.7□□□□□ -0.54
VRK3-224ENST00000601849 USP5P45974 858 aa11.7□□□□□ -0.54
VRK3-224ENST00000601849 ATP8B2P98198 1209 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms