RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	NAA16	Q6N069	864 aa	Predicted RBP	12.94	□□□□□ -0.34
LSM4-205	ENST00000597776	SSH3	Q8TE77	659 aa		12.94	□□□□□ -0.34
LSM4-205	ENST00000597776	AATF	Q9NY61	560 aa	Known RBP eCLIP	12.94	□□□□□ -0.34
LSM4-205	ENST00000597776	AGTPBP1	Q9UPW5	1226 aa		12.94	□□□□□ -0.34
LSM4-205	ENST00000597776	SLC45A1	Q9Y2W3	748 aa		12.94	□□□□□ -0.34
LSM4-205	ENST00000597776	MAST2	Q6P0Q8	1798 aa		12.94	□□□□□ -0.34
LSM4-205	ENST00000597776	SURF6	O75683	361 aa	Known RBP	12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	MAP4K4	O95819	1239 aa	Predicted RBP	12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	CYP2E1	P05181	493 aa	Predicted RBP	12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	ELN	P15502	786 aa		12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	CAP2	P40123	477 aa		12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	FLT3LG	P49771	235 aa		12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	ATP8B2	P98198	1209 aa		12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	SPP2	Q13103	211 aa		12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	ADGRA1	Q86SQ6	560 aa		12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	ITPRIP	Q8IWB1	547 aa		12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	FTSJ3	Q8IY81	847 aa	Known RBP	12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	ANKRD13C	Q8N6S4	541 aa		12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	NOL10	Q9BSC4	688 aa	Known RBP	12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	GPR108	Q9NPR9	543 aa		12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	TLR7	Q9NYK1	1049 aa	Known RBP	12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	PCDH10	Q9P2E7	1040 aa		12.93	□□□□□ -0.34
LSM4-205	ENST00000597776	SIPA1L1	O43166	1804 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	ATAD5	Q96QE3	1844 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776		H0YGN5	161 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	TNPO2	O14787	897 aa	Known RBP	12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	ADCY3	O60266	1144 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	ZAP70	P43403	619 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	HMGCS2	P54868	508 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	CCDC158	Q5M9N0	1113 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	MAPKAPK5	Q8IW41	473 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	MIER1	Q8N108	512 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	ZNF280C	Q8ND82	737 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	SLAIN1	Q8ND83	568 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	TGFBRAP1	Q8WUH2	860 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	RNF208	Q9H0X6	261 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	UNC93B1	Q9H1C4	597 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	PIH1D3	Q9NQM4	214 aa	Known RBP	12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	DBNL	Q9UJU6	430 aa	Known RBP	12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	LOC285556	D6RIA3	1793 aa		12.92	□□□□□ -0.34
LSM4-205	ENST00000597776	BAG3	O95817	575 aa		12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	GJB1	P08034	283 aa		12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	GJA8	P48165	433 aa		12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	UBXN2A	P68543	259 aa		12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	JAG1	P78504	1218 aa		12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	SHROOM1	Q2M3G4	852 aa	Predicted RBP	12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	PROCA1	Q8NCQ7	364 aa	Predicted RBP	12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	CCDC8	Q9H0W5	538 aa	Predicted RBP	12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	DNAJC18	Q9H819	358 aa		12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	PI4KB	Q9UBF8	816 aa		12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	SAP30BP	Q9UHR5	308 aa	Known RBP	12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	HERC5	Q9UII4	1024 aa	Known RBP	12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	TAOK2	Q9UL54	1235 aa		12.91	□□□□□ -0.34
LSM4-205	ENST00000597776	FLT1	P17948	1338 aa		12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	USP17L5	A8MUK1	530 aa		12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	ZBTB7B	O15156	539 aa	Predicted RBP	12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	INHA	P05111	366 aa		12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	PLCG2	P16885	1265 aa		12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	PPP4C	P60510	307 aa		12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	DYNLL1	P63167	89 aa	Known RBP	12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	PNMA3	Q9UL41	463 aa		12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	PALD1	Q9ULE6	856 aa		12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	COLQ	Q9Y215	455 aa	Predicted RBP	12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	NOP58	Q9Y2X3	529 aa	Known RBP	12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	NDUFB9	Q9Y6M9	179 aa		12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	MYO5A	Q9Y4I1	1855 aa	Known RBP	12.9	□□□□□ -0.34
LSM4-205	ENST00000597776	CDK5RAP2	Q96SN8	1893 aa		12.89	□□□□□ -0.35
LSM4-205	ENST00000597776	MTMR2	Q13614	643 aa		12.89	□□□□□ -0.35
LSM4-205	ENST00000597776	FAM110C	Q1W6H9	321 aa		12.89	□□□□□ -0.35
LSM4-205	ENST00000597776	UBE2Q1	Q7Z7E8	422 aa		12.89	□□□□□ -0.35
LSM4-205	ENST00000597776	NKX2-3	Q8TAU0	364 aa		12.89	□□□□□ -0.35
LSM4-205	ENST00000597776	U2AF1L4	Q8WU68	220 aa	Known RBP	12.89	□□□□□ -0.35
LSM4-205	ENST00000597776	EAF2	Q96CJ1	260 aa	Predicted RBP	12.89	□□□□□ -0.35
LSM4-205	ENST00000597776	ZNF512B	Q96KM6	892 aa	Predicted RBP	12.89	□□□□□ -0.35
LSM4-205	ENST00000597776	ASCC2	Q9H1I8	757 aa	Predicted RBP	12.89	□□□□□ -0.35
LSM4-205	ENST00000597776	DHX36	Q9H2U1	1008 aa	Known RBP	12.89	□□□□□ -0.35
LSM4-205	ENST00000597776	IDH1	O75874	414 aa	Known RBP	12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	GDF11	O95390	407 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	CYP7A1	P22680	504 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	FXR1	P51114	621 aa	Known RBP eCLIP	12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	IRF5	Q13568	498 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	SH3D19	Q5HYK7	790 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	CEP85	Q6P2H3	762 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	MIGA1	Q8NAN2	632 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	PANK1	Q8TE04	598 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	DPF3	Q92784	378 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	COA7	Q96BR5	231 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	TRIM34	Q9BYJ4	488 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	TBC1D2	Q9BYX2	928 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	AS3MT	Q9HBK9	375 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	CEP290	O15078	2479 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	FOCAD	Q5VW36	1801 aa		12.88	□□□□□ -0.35
LSM4-205	ENST00000597776	PEX10	O60683	326 aa		12.87	□□□□□ -0.35
LSM4-205	ENST00000597776	FARP2	O94887	1054 aa	Predicted RBP	12.87	□□□□□ -0.35
LSM4-205	ENST00000597776	ASNS	P08243	561 aa		12.87	□□□□□ -0.35
LSM4-205	ENST00000597776	GCLC	P48506	637 aa	Predicted RBP	12.87	□□□□□ -0.35
LSM4-205	ENST00000597776	BACE1	P56817	501 aa		12.87	□□□□□ -0.35
LSM4-205	ENST00000597776	PABPC4	Q13310	644 aa	Known RBP eCLIP	12.87	□□□□□ -0.35
LSM4-205	ENST00000597776	METTL16	Q86W50	562 aa	Known RBP	12.87	□□□□□ -0.35

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