RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 DOCK2Q92608 1830 aa12.34□□□□□ -0.43
LIG1-209ENST00000596104 A0A1W2PPC1 479 aa12.33□□□□□ -0.44
LIG1-209ENST00000596104 SRGAP3O43295 1099 aa12.33□□□□□ -0.44
LIG1-209ENST00000596104 EVI5O60447 810 aa12.33□□□□□ -0.44
LIG1-209ENST00000596104 CAP2P40123 477 aa12.33□□□□□ -0.44
LIG1-209ENST00000596104 SH3D19Q5HYK7 790 aa12.33□□□□□ -0.44
LIG1-209ENST00000596104 TBC1D9Q6ZT07 1266 aa12.33□□□□□ -0.44
LIG1-209ENST00000596104 ZNF280CQ8ND82 737 aa12.33□□□□□ -0.44
LIG1-209ENST00000596104 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.33□□□□□ -0.44
LIG1-209ENST00000596104 GJD2Q9UKL4 321 aa12.33□□□□□ -0.44
LIG1-209ENST00000596104 LDHCP07864 332 aa12.32□□□□□ -0.44
LIG1-209ENST00000596104 GNAI3P08754 354 aa12.32□□□□□ -0.44
LIG1-209ENST00000596104 ARID4AP29374 1257 aaPredicted RBP12.32□□□□□ -0.44
LIG1-209ENST00000596104 GCLCP48506 637 aaPredicted RBP12.32□□□□□ -0.44
LIG1-209ENST00000596104 RARSP54136 660 aaKnown RBP12.32□□□□□ -0.44
LIG1-209ENST00000596104 HMGCS2P54868 508 aa12.32□□□□□ -0.44
LIG1-209ENST00000596104 GSTO1P78417 241 aa12.32□□□□□ -0.44
LIG1-209ENST00000596104 SPATA5Q8NB90 893 aa12.32□□□□□ -0.44
LIG1-209ENST00000596104 DIS3LQ8TF46 1054 aaKnown RBP12.32□□□□□ -0.44
LIG1-209ENST00000596104 ARHGAP45Q92619 1136 aa12.32□□□□□ -0.44
LIG1-209ENST00000596104 PAWRQ96IZ0 340 aaKnown RBP12.32□□□□□ -0.44
LIG1-209ENST00000596104 TBC1D2Q9BYX2 928 aa12.32□□□□□ -0.44
LIG1-209ENST00000596104 ASCC2Q9H1I8 757 aaPredicted RBP12.32□□□□□ -0.44
LIG1-209ENST00000596104 TAOK2Q9UL54 1235 aa12.32□□□□□ -0.44
LIG1-209ENST00000596104 DOCK1Q14185 1865 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 MYH2Q9UKX2 1941 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 USP17L5A8MUK1 530 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 SOX1O00570 391 aaPredicted RBP12.31□□□□□ -0.44
LIG1-209ENST00000596104 HMGCRP04035 888 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 MCAMP43121 646 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 NECAB2Q7Z6G3 386 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 NEUROD6Q96NK8 337 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 MORF4L1Q9UBU8 362 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 STAP2Q9UGK3 403 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 PHIPQ8WWQ0 1821 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 PTPRFP10586 1907 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 AK9Q5TCS8 1911 aa12.31□□□□□ -0.44
LIG1-209ENST00000596104 MGAMO43451 1857 aa12.3□□□□□ -0.44
LIG1-209ENST00000596104 MNX1P50219 401 aaPredicted RBP12.3□□□□□ -0.44
LIG1-209ENST00000596104 JAG1P78504 1218 aa12.3□□□□□ -0.44
LIG1-209ENST00000596104 TRIM32Q13049 653 aa12.3□□□□□ -0.44
LIG1-209ENST00000596104 PABPC4Q13310 644 aaKnown RBP eCLIP12.3□□□□□ -0.44
LIG1-209ENST00000596104 TEX11Q8IYF3 940 aa12.3□□□□□ -0.44
LIG1-209ENST00000596104 ANKLE1Q8NAG6 615 aa12.3□□□□□ -0.44
LIG1-209ENST00000596104 GDF15Q99988 308 aa12.3□□□□□ -0.44
LIG1-209ENST00000596104 WDR18Q9BV38 432 aa12.3□□□□□ -0.44
LIG1-209ENST00000596104 RAI14Q9P0K7 980 aa12.3□□□□□ -0.44
LIG1-209ENST00000596104 HERC5Q9UII4 1024 aaKnown RBP12.3□□□□□ -0.44
LIG1-209ENST00000596104 PNMA6EA0A0J9YXQ4 647 aa12.29□□□□□ -0.44
LIG1-209ENST00000596104 GORABQ5T7V8 394 aa12.29□□□□□ -0.44
LIG1-209ENST00000596104 METTL16Q86W50 562 aaKnown RBP12.29□□□□□ -0.44
LIG1-209ENST00000596104 SH3RF3Q8TEJ3 882 aaPredicted RBP12.29□□□□□ -0.44
LIG1-209ENST00000596104 LRCH3Q96II8 777 aa12.29□□□□□ -0.44
LIG1-209ENST00000596104 DNAJC18Q9H819 358 aa12.29□□□□□ -0.44
LIG1-209ENST00000596104 PI4KBQ9UBF8 816 aa12.29□□□□□ -0.44
LIG1-209ENST00000596104 RPTORQ8N122 1335 aa12.29□□□□□ -0.44
LIG1-209ENST00000596104 UQCRFS1P1P0C7P4 283 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 HOXA7P31268 230 aaPredicted RBP12.28□□□□□ -0.44
LIG1-209ENST00000596104 BMP8BP34820 402 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 BACE1P56817 501 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 PPP4CP60510 307 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 MTMR2Q13614 643 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 MAP3K21Q5TCX8 1036 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 TRIB2Q92519 343 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 DHX36Q9H2U1 1008 aaKnown RBP12.28□□□□□ -0.44
LIG1-209ENST00000596104 AS3MTQ9HBK9 375 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 TXNRD2Q9NNW7 524 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 HMX1Q9NP08 348 aaPredicted RBP12.28□□□□□ -0.44
LIG1-209ENST00000596104 LRP2BPQ9P2M1 347 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 OGDHLQ9ULD0 1010 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 TNNQ9UQP3 1299 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 LOC285556D6RIA3 1793 aa12.28□□□□□ -0.44
LIG1-209ENST00000596104 PEX10O60683 326 aa12.27□□□□□ -0.45
LIG1-209ENST00000596104 GNAI2P04899 355 aa12.27□□□□□ -0.45
LIG1-209ENST00000596104 ASNSP08243 561 aa12.27□□□□□ -0.45
LIG1-209ENST00000596104 TRIM27P14373 513 aa12.27□□□□□ -0.45
LIG1-209ENST00000596104 IRX3P78415 501 aaPredicted RBP12.27□□□□□ -0.45
LIG1-209ENST00000596104 SHROOM1Q2M3G4 852 aaPredicted RBP12.27□□□□□ -0.45
LIG1-209ENST00000596104 ADGRA1Q86SQ6 560 aa12.27□□□□□ -0.45
LIG1-209ENST00000596104 C7orf61Q8IZ16 206 aa12.27□□□□□ -0.45
LIG1-209ENST00000596104 P2RX7Q99572 595 aaKnown RBP12.27□□□□□ -0.45
LIG1-209ENST00000596104 NBPF3Q9H094 633 aa12.27□□□□□ -0.45
LIG1-209ENST00000596104 AATFQ9NY61 560 aaKnown RBP eCLIP12.27□□□□□ -0.45
LIG1-209ENST00000596104 BAG3O95817 575 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 XRCC5P13010 732 aaKnown RBP12.26□□□□□ -0.45
LIG1-209ENST00000596104 CYP2B6P20813 491 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 HERVK_113P62684 666 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 G3BP1Q13283 466 aaKnown RBP eCLIP12.26□□□□□ -0.45
LIG1-209ENST00000596104 NAA16Q6N069 864 aaPredicted RBP12.26□□□□□ -0.45
LIG1-209ENST00000596104 POTEEQ6S8J3 1075 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 FOXP4Q8IVH2 680 aaPredicted RBP12.26□□□□□ -0.45
LIG1-209ENST00000596104 TGFBRAP1Q8WUH2 860 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 SOCS4Q8WXH5 440 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 USP6NLQ92738 828 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 C11orf49Q9H6J7 331 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 GPR108Q9NPR9 543 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 SNRKQ9NRH2 765 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 RBPJLQ9UBG7 517 aa12.26□□□□□ -0.45
LIG1-209ENST00000596104 ZMYND8Q9ULU4 1186 aaPredicted RBP12.26□□□□□ -0.45
LIG1-209ENST00000596104 FLT1P17948 1338 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms