RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 PCDHB15Q9Y5E8 787 aa18.37■□□□□ 0.53
TRIM28-205ENST00000595028 FLT1P17948 1338 aa18.37■□□□□ 0.53
TRIM28-205ENST00000595028 A0A0C4DFX4 3053 aa18.37■□□□□ 0.53
TRIM28-205ENST00000595028 NAV1Q8NEY1 1877 aa18.37■□□□□ 0.53
TRIM28-205ENST00000595028 GOLIM4O00461 696 aa18.36■□□□□ 0.53
TRIM28-205ENST00000595028 SMARCA5O60264 1052 aaPredicted RBP18.36■□□□□ 0.53
TRIM28-205ENST00000595028 SLURP2P0DP57 97 aa18.36■□□□□ 0.53
TRIM28-205ENST00000595028 SNAPC2Q13487 334 aa18.36■□□□□ 0.53
TRIM28-205ENST00000595028 OTOP1Q7RTM1 612 aa18.36■□□□□ 0.53
TRIM28-205ENST00000595028 CERS3Q8IU89 383 aa18.36■□□□□ 0.53
TRIM28-205ENST00000595028 SCYL3Q8IZE3 742 aa18.36■□□□□ 0.53
TRIM28-205ENST00000595028 MIGA1Q8NAN2 632 aa18.36■□□□□ 0.53
TRIM28-205ENST00000595028 TBC1D12O60347 775 aa18.35■□□□□ 0.53
TRIM28-205ENST00000595028 CETPP11597 493 aa18.35■□□□□ 0.53
TRIM28-205ENST00000595028 ATP5JP18859 108 aa18.35■□□□□ 0.53
TRIM28-205ENST00000595028 EN2P19622 333 aaPredicted RBP18.35■□□□□ 0.53
TRIM28-205ENST00000595028 DYNLL1P63167 89 aaKnown RBP18.35■□□□□ 0.53
TRIM28-205ENST00000595028 MAPKAPK5Q8IW41 473 aa18.35■□□□□ 0.53
TRIM28-205ENST00000595028 TGFBRAP1Q8WUH2 860 aa18.35■□□□□ 0.53
TRIM28-205ENST00000595028 PDE6AP16499 860 aa18.34■□□□□ 0.53
TRIM28-205ENST00000595028 CRHR2Q13324 411 aa18.34■□□□□ 0.53
TRIM28-205ENST00000595028 DHX36Q9H2U1 1008 aaKnown RBP18.34■□□□□ 0.53
TRIM28-205ENST00000595028 BOLA2Q9H3K6 86 aa18.34■□□□□ 0.53
TRIM28-205ENST00000595028 PAG1Q9NWQ8 432 aa18.34■□□□□ 0.53
TRIM28-205ENST00000595028 KCNH4Q9UQ05 1017 aa18.34■□□□□ 0.53
TRIM28-205ENST00000595028 RANBP2P49792 3224 aaKnown RBP18.34■□□□□ 0.53
TRIM28-205ENST00000595028 FAM196BA6NMK8 535 aa18.33■□□□□ 0.52
TRIM28-205ENST00000595028 CTNND1O60716 968 aaKnown RBP18.33■□□□□ 0.52
TRIM28-205ENST00000595028 FAM43AQ8N2R8 423 aa18.33■□□□□ 0.52
TRIM28-205ENST00000595028 EDC3Q96F86 508 aaKnown RBP18.33■□□□□ 0.52
TRIM28-205ENST00000595028 HAUS7Q99871 368 aa18.33■□□□□ 0.52
TRIM28-205ENST00000595028 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.33■□□□□ 0.52
TRIM28-205ENST00000595028 PICK1Q9NRD5 415 aa18.33■□□□□ 0.52
TRIM28-205ENST00000595028 TAF1CQ15572 869 aaPredicted RBP18.32■□□□□ 0.52
TRIM28-205ENST00000595028 SLC9C2Q5TAH2 1124 aa18.32■□□□□ 0.52
TRIM28-205ENST00000595028 RIOK1Q9BRS2 568 aaKnown RBP18.32■□□□□ 0.52
TRIM28-205ENST00000595028 ZCCHC17Q9NP64 241 aaKnown RBP18.32■□□□□ 0.52
TRIM28-205ENST00000595028 HERC5Q9UII4 1024 aaKnown RBP18.32■□□□□ 0.52
TRIM28-205ENST00000595028 ZNF532Q9HCE3 1301 aa18.31■□□□□ 0.52
TRIM28-205ENST00000595028 PTPRAP18433 802 aa18.31■□□□□ 0.52
TRIM28-205ENST00000595028 ECHDC1Q9NTX5 307 aa18.31■□□□□ 0.52
TRIM28-205ENST00000595028 PI4KBQ9UBF8 816 aa18.31■□□□□ 0.52
TRIM28-205ENST00000595028 PTPN22Q9Y2R2 807 aa18.31■□□□□ 0.52
TRIM28-205ENST00000595028 LOC285556D6RIA3 1793 aa18.3■□□□□ 0.52
TRIM28-205ENST00000595028 TCRBV5S4A2TA0A5A2 114 aa18.3■□□□□ 0.52
TRIM28-205ENST00000595028 BTBD19C9JJ37 291 aa18.3■□□□□ 0.52
TRIM28-205ENST00000595028 DLL1O00548 723 aa18.3■□□□□ 0.52
TRIM28-205ENST00000595028 ARMC5Q96C12 935 aa18.3■□□□□ 0.52
TRIM28-205ENST00000595028 GPATCH3Q96I76 525 aa18.3■□□□□ 0.52
TRIM28-205ENST00000595028 DNAJC18Q9H819 358 aa18.3■□□□□ 0.52
TRIM28-205ENST00000595028 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-205ENST00000595028 SAP30BPQ9UHR5 308 aaKnown RBP18.3■□□□□ 0.52
TRIM28-205ENST00000595028 PALD1Q9ULE6 856 aa18.3■□□□□ 0.52
TRIM28-205ENST00000595028 ZHX2Q9Y6X8 837 aa18.3■□□□□ 0.52
TRIM28-205ENST00000595028 COL6A3P12111 3177 aa18.3■□□□□ 0.52
TRIM28-205ENST00000595028 MAGEB6P1A0A0J9YX57 407 aa18.29■□□□□ 0.52
TRIM28-205ENST00000595028 CXCL11O14625 94 aa18.29■□□□□ 0.52
TRIM28-205ENST00000595028 HLA-DOAP06340 250 aa18.29■□□□□ 0.52
TRIM28-205ENST00000595028 USP5P45974 858 aa18.29■□□□□ 0.52
TRIM28-205ENST00000595028 MOGSQ13724 837 aa18.29■□□□□ 0.52
TRIM28-205ENST00000595028 ANKRD23Q86SG2 305 aa18.29■□□□□ 0.52
TRIM28-205ENST00000595028 METTL16Q86W50 562 aaKnown RBP18.29■□□□□ 0.52
TRIM28-205ENST00000595028 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.29■□□□□ 0.522e-8■■■□□ 18.6
TRIM28-205ENST00000595028 ZFYVE28Q9HCC9 887 aa18.29■□□□□ 0.52
TRIM28-205ENST00000595028 A0A0G2JLL6 359 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-205ENST00000595028 ADD2P35612 726 aa18.28■□□□□ 0.52
TRIM28-205ENST00000595028 CAP2P40123 477 aa18.28■□□□□ 0.52
TRIM28-205ENST00000595028 RRP1BQ14684 758 aaKnown RBP18.28■□□□□ 0.52
TRIM28-205ENST00000595028 PRRT2Q7Z6L0 340 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-205ENST00000595028 CCDC84Q86UT8 332 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-205ENST00000595028 AFG3L2Q9Y4W6 797 aa18.28■□□□□ 0.52
TRIM28-205ENST00000595028 AAMPQ13685 434 aa18.27■□□□□ 0.52
TRIM28-205ENST00000595028 SLC4A8Q2Y0W8 1093 aa18.27■□□□□ 0.52
TRIM28-205ENST00000595028 TSHZ3Q63HK5 1081 aa18.27■□□□□ 0.52
TRIM28-205ENST00000595028 FOXP4Q8IVH2 680 aaPredicted RBP18.27■□□□□ 0.52
TRIM28-205ENST00000595028 LCORLQ8N3X6 602 aa18.27■□□□□ 0.52
TRIM28-205ENST00000595028 CRACR2BQ8N4Y2 399 aaPredicted RBP18.27■□□□□ 0.52
TRIM28-205ENST00000595028 CD99L2Q8TCZ2 262 aa18.27■□□□□ 0.52
TRIM28-205ENST00000595028 ERO1AQ96HE7 468 aa18.27■□□□□ 0.52
TRIM28-205ENST00000595028 TRIM34Q9BYJ4 488 aa18.27■□□□□ 0.52
TRIM28-205ENST00000595028 CRNKL1Q9BZJ0 848 aaKnown RBP18.27■□□□□ 0.52
TRIM28-205ENST00000595028 CUL9Q8IWT3 2517 aa18.27■□□□□ 0.52
TRIM28-205ENST00000595028 BAZ2AQ9UIF9 1905 aaKnown RBP18.26■□□□□ 0.51
TRIM28-205ENST00000595028 SP3Q02447 781 aa18.26■□□□□ 0.51
TRIM28-205ENST00000595028 HDAC1Q13547 482 aaPredicted RBP18.26■□□□□ 0.51
TRIM28-205ENST00000595028 EHD4Q9H223 541 aa18.26■□□□□ 0.51
TRIM28-205ENST00000595028 ZSWIM8A7E2V4 1837 aa18.26■□□□□ 0.51
TRIM28-205ENST00000595028 TTC41PQ6P2S7 1318 aa18.25■□□□□ 0.51
TRIM28-205ENST00000595028 ADGRA2Q96PE1 1338 aa18.25■□□□□ 0.51
TRIM28-205ENST00000595028 TRIM75PA6NK02 468 aa18.25■□□□□ 0.51
TRIM28-205ENST00000595028 H0YGN5 161 aa18.25■□□□□ 0.51
TRIM28-205ENST00000595028 PDHXO00330 501 aa18.25■□□□□ 0.51
TRIM28-205ENST00000595028 TLR2O60603 784 aa18.25■□□□□ 0.51
TRIM28-205ENST00000595028 UBE3CQ15386 1083 aa18.25■□□□□ 0.51
TRIM28-205ENST00000595028 SLFNL1Q499Z3 407 aa18.25■□□□□ 0.51
TRIM28-205ENST00000595028 GPAT2Q6NUI2 795 aa18.25■□□□□ 0.51
TRIM28-205ENST00000595028 FASTKD5Q7L8L6 764 aaKnown RBP18.25■□□□□ 0.51
TRIM28-205ENST00000595028 TMEM106CQ9BVX2 250 aa18.25■□□□□ 0.51
TRIM28-205ENST00000595028 TBC1D2Q9BYX2 928 aa18.25■□□□□ 0.51
TRIM28-205ENST00000595028 EFCC1Q9HA90 598 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms