RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 EHD4Q9H223 541 aa12.88□□□□□ -0.35
USE1-204ENST00000594399 ANAPC4Q9UJX5 808 aa12.88□□□□□ -0.35
USE1-204ENST00000594399 PLCD1P51178 756 aa12.87□□□□□ -0.35
USE1-204ENST00000594399 ANAPC15P60006 121 aa12.87□□□□□ -0.35
USE1-204ENST00000594399 CTDSPL2Q05D32 466 aa12.87□□□□□ -0.35
USE1-204ENST00000594399 KRT26Q7Z3Y9 468 aa12.87□□□□□ -0.35
USE1-204ENST00000594399 DNAJC5GQ8N7S2 189 aa12.87□□□□□ -0.35
USE1-204ENST00000594399 STAG1Q8WVM7 1258 aa12.87□□□□□ -0.35
USE1-204ENST00000594399 TRIM34Q9BYJ4 488 aa12.87□□□□□ -0.35
USE1-204ENST00000594399 RNF41Q9H4P4 317 aaPredicted RBP12.87□□□□□ -0.35
USE1-204ENST00000594399 PI4KBQ9UBF8 816 aa12.87□□□□□ -0.35
USE1-204ENST00000594399 PGAP2Q9UHJ9 254 aa12.87□□□□□ -0.35
USE1-204ENST00000594399 SERPINB13Q9UIV8 391 aa12.87□□□□□ -0.35
USE1-204ENST00000594399 TAOK2Q9UL54 1235 aa12.87□□□□□ -0.35
USE1-204ENST00000594399 SCAF8Q9UPN6 1271 aaKnown RBP12.87□□□□□ -0.35
USE1-204ENST00000594399 ADM5C9JUS6 153 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 PCP11498 1178 aaKnown RBP12.86□□□□□ -0.35
USE1-204ENST00000594399 HTRA3P83110 453 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 EVX2Q03828 476 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 PDE4BQ07343 736 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 KRT32Q14532 448 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 TSGA10IPQ3SY00 556 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 C16orf86Q6ZW13 317 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 CRACR2BQ8N4Y2 399 aaPredicted RBP12.86□□□□□ -0.35
USE1-204ENST00000594399 KLRG1Q96E93 195 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 ZNF287Q9HBT7 754 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 HERC5Q9UII4 1024 aaKnown RBP12.86□□□□□ -0.35
USE1-204ENST00000594399 SNX14Q9Y5W7 946 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 TAF6LQ9Y6J9 622 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 SSC5DA1L4H1 1573 aa12.86□□□□□ -0.35
USE1-204ENST00000594399 E7EWF7 191 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 SMIM22K7EJ46 135 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 GABPAQ06546 454 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 AKNAD1Q5T1N1 836 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 CDC37L1Q7L3B6 337 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 RALYLQ86SE5 291 aaKnown RBP12.85□□□□□ -0.35
USE1-204ENST00000594399 CDAN1Q8IWY9 1227 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 RASEFQ8IZ41 740 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 STK11IPQ8N1F8 1099 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 HOOK2Q96ED9 719 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 DYNLL2Q96FJ2 89 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 TEPSINQ96N21 525 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 CREBZFQ9NS37 354 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 SWAP70Q9UH65 585 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.85□□□□□ -0.35
USE1-204ENST00000594399 NEDD4P46934 1319 aa12.85□□□□□ -0.35
USE1-204ENST00000594399 MYH8P13535 1937 aa12.84□□□□□ -0.35
USE1-204ENST00000594399 NT5C2P49902 561 aa12.84□□□□□ -0.35
USE1-204ENST00000594399 TRDNQ13061 729 aa12.84□□□□□ -0.35
USE1-204ENST00000594399 DCAF15Q66K64 600 aa12.84□□□□□ -0.35
USE1-204ENST00000594399 MAP1SQ66K74 1059 aaPredicted RBP12.84□□□□□ -0.35
USE1-204ENST00000594399 MFSD6Q6ZSS7 791 aa12.84□□□□□ -0.35
USE1-204ENST00000594399 STOX1Q6ZVD7 989 aa12.84□□□□□ -0.35
USE1-204ENST00000594399 FOXP4Q8IVH2 680 aaPredicted RBP12.84□□□□□ -0.35
USE1-204ENST00000594399 SLC44A5Q8NCS7 719 aa12.84□□□□□ -0.35
USE1-204ENST00000594399 IL17RAQ96F46 866 aa12.84□□□□□ -0.35
USE1-204ENST00000594399 GLIS2Q9BZE0 524 aaPredicted RBP12.84□□□□□ -0.35
USE1-204ENST00000594399 CNNM2Q9H8M5 875 aa12.84□□□□□ -0.35
USE1-204ENST00000594399 PASKQ96RG2 1323 aa12.84□□□□□ -0.35
USE1-204ENST00000594399 ORC4O43929 436 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 TBC1D12O60347 775 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 ITGBL1O95965 494 aaPredicted RBP12.83□□□□□ -0.36
USE1-204ENST00000594399 FGRP09769 529 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 PSMA5P28066 241 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 CDK8P49336 464 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 ADCK5Q3MIX3 580 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 NBPF12Q5TAG4 269 aaPredicted RBP12.83□□□□□ -0.36
USE1-204ENST00000594399 USP48Q86UV5 1035 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 METTL16Q86W50 562 aaKnown RBP12.83□□□□□ -0.36
USE1-204ENST00000594399 NCOA7Q8NI08 942 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 JAKMIP1Q96N16 626 aaKnown RBP12.83□□□□□ -0.36
USE1-204ENST00000594399 KRT23Q9C075 422 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 DNAJC18Q9H819 358 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 MKNK2Q9HBH9 465 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 TOMM22Q9NS69 142 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 TACC3Q9Y6A5 838 aa12.83□□□□□ -0.36
USE1-204ENST00000594399 POLR2AP24928 1970 aaKnown RBP12.82□□□□□ -0.36
USE1-204ENST00000594399 TMEM88BA6NKF7 163 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 FAM196BA6NMK8 535 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 PRDM1O75626 825 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 HMGB1P09429 215 aaKnown RBP12.82□□□□□ -0.36
USE1-204ENST00000594399 SHMT1P34896 483 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 NF2P35240 595 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 SUPT20HL1Q3ZLR7 823 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 RRP12Q5JTH9 1297 aaKnown RBP12.82□□□□□ -0.36
USE1-204ENST00000594399 PRAMEF18Q5VWM3 479 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 JMYQ8N9B5 988 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 ESR2Q92731 530 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 CDCA5Q96FF9 252 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 NEK1Q96PY6 1258 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 TM6SF1Q9BZW5 370 aa12.82□□□□□ -0.36
USE1-204ENST00000594399 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.82□□□□□ -0.36
USE1-204ENST00000594399 B4E1Z4 1266 aa12.81□□□□□ -0.36
USE1-204ENST00000594399 KDM4AO75164 1064 aa12.81□□□□□ -0.36
USE1-204ENST00000594399 SLURP2P0DP57 97 aa12.81□□□□□ -0.36
USE1-204ENST00000594399 CASTP20810 708 aaKnown RBP12.81□□□□□ -0.36
USE1-204ENST00000594399 RASA1P20936 1047 aa12.81□□□□□ -0.36
USE1-204ENST00000594399 MAP3K10Q02779 954 aa12.81□□□□□ -0.36
USE1-204ENST00000594399 BLOC1S2Q6QNY1 142 aa12.81□□□□□ -0.36
USE1-204ENST00000594399 MB21D2Q8IYB1 491 aaPredicted RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms