RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 TRIM75PA6NK02 468 aa14.48□□□□□ -0.09
CLIP3-204ENST00000590559 FAM196BA6NMK8 535 aa14.48□□□□□ -0.09
CLIP3-204ENST00000590559 H0YGN5 161 aa14.48□□□□□ -0.09
CLIP3-204ENST00000590559 GSTO1P78417 241 aa14.48□□□□□ -0.09
CLIP3-204ENST00000590559 IRF5Q13568 498 aa14.48□□□□□ -0.09
CLIP3-204ENST00000590559 TREML2Q5T2D2 321 aa14.48□□□□□ -0.09
CLIP3-204ENST00000590559 METTL16Q86W50 562 aaKnown RBP14.48□□□□□ -0.09
CLIP3-204ENST00000590559 PROCA1Q8NCQ7 364 aaPredicted RBP14.48□□□□□ -0.09
CLIP3-204ENST00000590559 SSH3Q8TE77 659 aa14.48□□□□□ -0.09
CLIP3-204ENST00000590559 PXYLP1Q8TE99 480 aa14.48□□□□□ -0.09
CLIP3-204ENST00000590559 TRIOBPQ9H2D6 2365 aa14.47□□□□□ -0.09
CLIP3-204ENST00000590559 COL6A3P12111 3177 aa14.47□□□□□ -0.09
CLIP3-204ENST00000590559 CAP2P40123 477 aa14.47□□□□□ -0.09
CLIP3-204ENST00000590559 FLT3LGP49771 235 aa14.47□□□□□ -0.09
CLIP3-204ENST00000590559 G3BP1Q13283 466 aaKnown RBP eCLIP14.47□□□□□ -0.09
CLIP3-204ENST00000590559 SH3D19Q5HYK7 790 aa14.47□□□□□ -0.09
CLIP3-204ENST00000590559 TBC1D2Q9BYX2 928 aa14.47□□□□□ -0.09
CLIP3-204ENST00000590559 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.47□□□□□ -0.09
CLIP3-204ENST00000590559 ADCY3O60266 1144 aa14.46□□□□□ -0.09
CLIP3-204ENST00000590559 UQCRFS1P1P0C7P4 283 aa14.46□□□□□ -0.09
CLIP3-204ENST00000590559 PPP4CP60510 307 aa14.46□□□□□ -0.09
CLIP3-204ENST00000590559 UBXN2AP68543 259 aa14.46□□□□□ -0.09
CLIP3-204ENST00000590559 FAM110CQ1W6H9 321 aa14.46□□□□□ -0.09
CLIP3-204ENST00000590559 TMEM57Q8N5G2 664 aa14.46□□□□□ -0.09
CLIP3-204ENST00000590559 ZNF280CQ8ND82 737 aa14.46□□□□□ -0.09
CLIP3-204ENST00000590559 SH3RF3Q8TEJ3 882 aaPredicted RBP14.46□□□□□ -0.09
CLIP3-204ENST00000590559 U2AF1L4Q8WU68 220 aaKnown RBP14.46□□□□□ -0.09
CLIP3-204ENST00000590559 CLUAP1Q96AJ1 413 aa14.46□□□□□ -0.09
CLIP3-204ENST00000590559 ZNF512BQ96KM6 892 aaPredicted RBP14.46□□□□□ -0.09
CLIP3-204ENST00000590559 RNF208Q9H0X6 261 aa14.46□□□□□ -0.09
CLIP3-204ENST00000590559 UNC93B1Q9H1C4 597 aa14.46□□□□□ -0.09
CLIP3-204ENST00000590559 PRO3102Q9H379 93 aa14.46□□□□□ -0.09
CLIP3-204ENST00000590559 HERC5Q9UII4 1024 aaKnown RBP14.46□□□□□ -0.09
CLIP3-204ENST00000590559 MYH1P12882 1939 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 IGSF3O75054 1194 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 SGPL1O95470 568 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 CYP2E1P05181 493 aaPredicted RBP14.45□□□□□ -0.1
CLIP3-204ENST00000590559 CAPN2P17655 700 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 ATP8B2P98198 1209 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 SPP2Q13103 211 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 TNNI3KQ59H18 835 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 GORABQ5T7V8 394 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 ADGRA1Q86SQ6 560 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 FRAT1Q92837 279 aaPredicted RBP14.45□□□□□ -0.1
CLIP3-204ENST00000590559 DNAJC18Q9H819 358 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 PAK6Q9NQU5 681 aaPredicted RBP14.45□□□□□ -0.1
CLIP3-204ENST00000590559 RAI14Q9P0K7 980 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 FPGT-TNNI3KV9GXZ4 949 aa14.45□□□□□ -0.1
CLIP3-204ENST00000590559 LAMA2P24043 3122 aaKnown RBP14.45□□□□□ -0.1
CLIP3-204ENST00000590559 TNPO2O14787 897 aaKnown RBP14.44□□□□□ -0.1
CLIP3-204ENST00000590559 ELNP15502 786 aa14.44□□□□□ -0.1
CLIP3-204ENST00000590559 JAG1P78504 1218 aa14.44□□□□□ -0.1
CLIP3-204ENST00000590559 TEX11Q8IYF3 940 aa14.44□□□□□ -0.1
CLIP3-204ENST00000590559 ANKRD13CQ8N6S4 541 aa14.44□□□□□ -0.1
CLIP3-204ENST00000590559 SMCR8Q8TEV9 937 aaPredicted RBP14.44□□□□□ -0.1
CLIP3-204ENST00000590559 DBNDD2Q9BQY9 259 aa14.44□□□□□ -0.1
CLIP3-204ENST00000590559 WDR18Q9BV38 432 aa14.44□□□□□ -0.1
CLIP3-204ENST00000590559 DHX36Q9H2U1 1008 aaKnown RBP14.44□□□□□ -0.1
CLIP3-204ENST00000590559 LRP2BPQ9P2M1 347 aa14.44□□□□□ -0.1
CLIP3-204ENST00000590559 PI4KBQ9UBF8 816 aa14.44□□□□□ -0.1
CLIP3-204ENST00000590559 PNMA3Q9UL41 463 aa14.44□□□□□ -0.1
CLIP3-204ENST00000590559 NOP58Q9Y2X3 529 aaKnown RBP14.44□□□□□ -0.1
CLIP3-204ENST00000590559 USP17L5A8MUK1 530 aa14.43□□□□□ -0.1
CLIP3-204ENST00000590559 INHAP05111 366 aa14.43□□□□□ -0.1
CLIP3-204ENST00000590559 GCLCP48506 637 aaPredicted RBP14.43□□□□□ -0.1
CLIP3-204ENST00000590559 HMGCS2P54868 508 aa14.43□□□□□ -0.1
CLIP3-204ENST00000590559 ZKSCAN2Q63HK3 967 aa14.43□□□□□ -0.1
CLIP3-204ENST00000590559 CRISPLD2Q9H0B8 497 aa14.43□□□□□ -0.1
CLIP3-204ENST00000590559 SNRKQ9NRH2 765 aa14.43□□□□□ -0.1
CLIP3-204ENST00000590559 AATFQ9NY61 560 aaKnown RBP eCLIP14.43□□□□□ -0.1
CLIP3-204ENST00000590559 BIN2Q9UBW5 565 aaPredicted RBP14.43□□□□□ -0.1
CLIP3-204ENST00000590559 GJD2Q9UKL4 321 aa14.43□□□□□ -0.1
CLIP3-204ENST00000590559 FLT1P17948 1338 aa14.42□□□□□ -0.1
CLIP3-204ENST00000590559 DDX60LQ5H9U9 1706 aaKnown RBP14.42□□□□□ -0.1
CLIP3-204ENST00000590559 ZBTB7BO15156 539 aaPredicted RBP14.42□□□□□ -0.1
CLIP3-204ENST00000590559 HOXA7P31268 230 aaPredicted RBP14.42□□□□□ -0.1
CLIP3-204ENST00000590559 NAA16Q6N069 864 aaPredicted RBP14.42□□□□□ -0.1
CLIP3-204ENST00000590559 ASCC2Q9H1I8 757 aaPredicted RBP14.42□□□□□ -0.1
CLIP3-204ENST00000590559 MORF4L1Q9UBU8 362 aa14.42□□□□□ -0.1
CLIP3-204ENST00000590559 FARP2O94887 1054 aaPredicted RBP14.41□□□□□ -0.1
CLIP3-204ENST00000590559 BAG3O95817 575 aa14.41□□□□□ -0.1
CLIP3-204ENST00000590559 PLCG2P16885 1265 aa14.41□□□□□ -0.1
CLIP3-204ENST00000590559 BACE1P56817 501 aa14.41□□□□□ -0.1
CLIP3-204ENST00000590559 CCDC158Q5M9N0 1113 aa14.41□□□□□ -0.1
CLIP3-204ENST00000590559 TTC39AQ5SRH9 613 aa14.41□□□□□ -0.1
CLIP3-204ENST00000590559 FOXP4Q8IVH2 680 aaPredicted RBP14.41□□□□□ -0.1
CLIP3-204ENST00000590559 TGFBRAP1Q8WUH2 860 aa14.41□□□□□ -0.1
CLIP3-204ENST00000590559 DPF3Q92784 378 aa14.41□□□□□ -0.1
CLIP3-204ENST00000590559 COA7Q96BR5 231 aa14.41□□□□□ -0.1
CLIP3-204ENST00000590559 HTATIP2Q9BUP3 242 aa14.41□□□□□ -0.1
CLIP3-204ENST00000590559 PIH1D3Q9NQM4 214 aaKnown RBP14.41□□□□□ -0.1
CLIP3-204ENST00000590559 RBM27Q9P2N5 1060 aaKnown RBP14.41□□□□□ -0.1
CLIP3-204ENST00000590559 DBNLQ9UJU6 430 aaKnown RBP14.41□□□□□ -0.1
CLIP3-204ENST00000590559 ASNSP08243 561 aa14.4□□□□□ -0.1
CLIP3-204ENST00000590559 RLBP1P12271 317 aa14.4□□□□□ -0.1
CLIP3-204ENST00000590559 ZAP70P43403 619 aa14.4□□□□□ -0.1
CLIP3-204ENST00000590559 PABPC4Q13310 644 aaKnown RBP eCLIP14.4□□□□□ -0.1
CLIP3-204ENST00000590559 SHROOM1Q2M3G4 852 aaPredicted RBP14.4□□□□□ -0.1
CLIP3-204ENST00000590559 POTEEQ6S8J3 1075 aa14.4□□□□□ -0.1
CLIP3-204ENST00000590559 CHRDL2Q6WN34 429 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms