RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 FRAT1Q92837 279 aaPredicted RBP14.36□□□□□ -0.11
LIG3-207ENST00000586119 TAOK2Q9UL54 1235 aa14.36□□□□□ -0.11
LIG3-207ENST00000586119 TNPO2O14787 897 aaKnown RBP14.35□□□□□ -0.11
LIG3-207ENST00000586119 TBC1D12O60347 775 aa14.35□□□□□ -0.11
LIG3-207ENST00000586119 SGPL1O95470 568 aa14.35□□□□□ -0.11
LIG3-207ENST00000586119 INHAP05111 366 aa14.35□□□□□ -0.11
LIG3-207ENST00000586119 GORABQ5T7V8 394 aa14.35□□□□□ -0.11
LIG3-207ENST00000586119 SLAIN1Q8ND83 568 aa14.35□□□□□ -0.11
LIG3-207ENST00000586119 SMCR8Q8TEV9 937 aaPredicted RBP14.35□□□□□ -0.11
LIG3-207ENST00000586119 OSBPL5Q9H0X9 879 aaPredicted RBP14.35□□□□□ -0.11
LIG3-207ENST00000586119 AGTPBP1Q9UPW5 1226 aa14.35□□□□□ -0.11
LIG3-207ENST00000586119 SLC45A1Q9Y2W3 748 aa14.35□□□□□ -0.11
LIG3-207ENST00000586119 SIPA1L1O43166 1804 aa14.34□□□□□ -0.11
LIG3-207ENST00000586119 GNAI2P04899 355 aa14.34□□□□□ -0.11
LIG3-207ENST00000586119 ARID4AP29374 1257 aaPredicted RBP14.34□□□□□ -0.11
LIG3-207ENST00000586119 HMGCS2P54868 508 aa14.34□□□□□ -0.11
LIG3-207ENST00000586119 G3BP1Q13283 466 aaKnown RBP eCLIP14.34□□□□□ -0.11
LIG3-207ENST00000586119 NKX2-3Q8TAU0 364 aa14.34□□□□□ -0.11
LIG3-207ENST00000586119 DEFB118Q96PH6 123 aa14.34□□□□□ -0.11
LIG3-207ENST00000586119 CDK5RAP2Q96SN8 1893 aa14.33□□□□□ -0.11
LIG3-207ENST00000586119 ALPK3Q96L96 1907 aa14.33□□□□□ -0.11
LIG3-207ENST00000586119 NPM3O75607 178 aaKnown RBP14.33□□□□□ -0.12
LIG3-207ENST00000586119 FARP2O94887 1054 aaPredicted RBP14.33□□□□□ -0.12
LIG3-207ENST00000586119 TFRCP02786 760 aaKnown RBP14.33□□□□□ -0.12
LIG3-207ENST00000586119 LDHCP07864 332 aa14.33□□□□□ -0.12
LIG3-207ENST00000586119 CAP2P40123 477 aa14.33□□□□□ -0.12
LIG3-207ENST00000586119 TRIM32Q13049 653 aa14.33□□□□□ -0.12
LIG3-207ENST00000586119 ADGRA1Q86SQ6 560 aa14.33□□□□□ -0.12
LIG3-207ENST00000586119 TEX11Q8IYF3 940 aa14.33□□□□□ -0.12
LIG3-207ENST00000586119 MIER1Q8N108 512 aa14.33□□□□□ -0.12
LIG3-207ENST00000586119 TMEM57Q8N5G2 664 aa14.33□□□□□ -0.12
LIG3-207ENST00000586119 ZNF280CQ8ND82 737 aa14.33□□□□□ -0.12
LIG3-207ENST00000586119 DBNDD2Q9BQY9 259 aa14.33□□□□□ -0.12
LIG3-207ENST00000586119 LRP2BPQ9P2M1 347 aa14.33□□□□□ -0.12
LIG3-207ENST00000586119 SZT2Q5T011 3432 aa14.33□□□□□ -0.12
LIG3-207ENST00000586119 GSTO1P78417 241 aa14.32□□□□□ -0.12
LIG3-207ENST00000586119 IRF5Q13568 498 aa14.32□□□□□ -0.12
LIG3-207ENST00000586119 ATF7IPQ6VMQ6 1270 aa14.32□□□□□ -0.12
LIG3-207ENST00000586119 PXYLP1Q8TE99 480 aa14.32□□□□□ -0.12
LIG3-207ENST00000586119 DIS3LQ8TF46 1054 aaKnown RBP14.32□□□□□ -0.12
LIG3-207ENST00000586119 C1orf115Q9H7X2 142 aa14.32□□□□□ -0.12
LIG3-207ENST00000586119 AATFQ9NY61 560 aaKnown RBP eCLIP14.32□□□□□ -0.12
LIG3-207ENST00000586119 PLXNB2O15031 1838 aa14.31□□□□□ -0.12
LIG3-207ENST00000586119 ZBTB7BO15156 539 aaPredicted RBP14.31□□□□□ -0.12
LIG3-207ENST00000586119 CYP2E1P05181 493 aaPredicted RBP14.31□□□□□ -0.12
LIG3-207ENST00000586119 MAPKAPK5Q8IW41 473 aa14.31□□□□□ -0.12
LIG3-207ENST00000586119 PROCA1Q8NCQ7 364 aaPredicted RBP14.31□□□□□ -0.12
LIG3-207ENST00000586119 TGFBRAP1Q8WUH2 860 aa14.31□□□□□ -0.12
LIG3-207ENST00000586119 ASCC2Q9H1I8 757 aaPredicted RBP14.31□□□□□ -0.12
LIG3-207ENST00000586119 PRO3102Q9H379 93 aa14.31□□□□□ -0.12
LIG3-207ENST00000586119 DNAJC18Q9H819 358 aa14.31□□□□□ -0.12
LIG3-207ENST00000586119 GJD2Q9UKL4 321 aa14.31□□□□□ -0.12
LIG3-207ENST00000586119 LOC285556D6RIA3 1793 aa14.31□□□□□ -0.12
LIG3-207ENST00000586119 USP17L5A8MUK1 530 aa14.3□□□□□ -0.12
LIG3-207ENST00000586119 IPO8O15397 1037 aaKnown RBP14.3□□□□□ -0.12
LIG3-207ENST00000586119 GDF11O95390 407 aa14.3□□□□□ -0.12
LIG3-207ENST00000586119 DYNLL1P63167 89 aaKnown RBP14.3□□□□□ -0.12
LIG3-207ENST00000586119 POLA2Q14181 598 aa14.3□□□□□ -0.12
LIG3-207ENST00000586119 FAM110CQ1W6H9 321 aa14.3□□□□□ -0.12
LIG3-207ENST00000586119 TNNI3KQ59H18 835 aa14.3□□□□□ -0.12
LIG3-207ENST00000586119 NAA16Q6N069 864 aaPredicted RBP14.3□□□□□ -0.12
LIG3-207ENST00000586119 COA7Q96BR5 231 aa14.3□□□□□ -0.12
LIG3-207ENST00000586119 PAWRQ96IZ0 340 aaKnown RBP14.3□□□□□ -0.12
LIG3-207ENST00000586119 P2RX7Q99572 595 aaKnown RBP14.3□□□□□ -0.12
LIG3-207ENST00000586119 HTATIP2Q9BUP3 242 aa14.3□□□□□ -0.12
LIG3-207ENST00000586119 PIH1D3Q9NQM4 214 aaKnown RBP14.3□□□□□ -0.12
LIG3-207ENST00000586119 PAK6Q9NQU5 681 aaPredicted RBP14.3□□□□□ -0.12
LIG3-207ENST00000586119 PALD1Q9ULE6 856 aa14.3□□□□□ -0.12
LIG3-207ENST00000586119 FPGT-TNNI3KV9GXZ4 949 aa14.3□□□□□ -0.12
LIG3-207ENST00000586119 UQCRFS1P1P0C7P4 283 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 ZAP70P43403 619 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 ATP8B2P98198 1209 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 MTMR2Q13614 643 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 SH3D19Q5HYK7 790 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 TTC39AQ5SRH9 613 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 POTEEQ6S8J3 1075 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 CRISPLD2Q9H0B8 497 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 TXNRD2Q9NNW7 524 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 TLR7Q9NYK1 1049 aaKnown RBP14.29□□□□□ -0.12
LIG3-207ENST00000586119 PI4KBQ9UBF8 816 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 STAP2Q9UGK3 403 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 SAP30BPQ9UHR5 308 aaKnown RBP14.29□□□□□ -0.12
LIG3-207ENST00000586119 PNMA3Q9UL41 463 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 NDUFB9Q9Y6M9 179 aa14.29□□□□□ -0.12
LIG3-207ENST00000586119 SURF6O75683 361 aaKnown RBP14.28□□□□□ -0.12
LIG3-207ENST00000586119 MAP4K4O95819 1239 aaPredicted RBP14.28□□□□□ -0.12
LIG3-207ENST00000586119 PPP4CP60510 307 aa14.28□□□□□ -0.12
LIG3-207ENST00000586119 Q3C1V9 767 aa14.28□□□□□ -0.12
LIG3-207ENST00000586119 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.28□□□□□ -0.12
LIG3-207ENST00000586119 CCDC8Q9H0W5 538 aaPredicted RBP14.28□□□□□ -0.12
LIG3-207ENST00000586119 RANBP2P49792 3224 aaKnown RBP14.28□□□□□ -0.12
LIG3-207ENST00000586119 FOCADQ5VW36 1801 aa14.27□□□□□ -0.12
LIG3-207ENST00000586119 COL2A1P02458 1487 aaPredicted RBP14.27□□□□□ -0.12
LIG3-207ENST00000586119 SOX1O00570 391 aaPredicted RBP14.27□□□□□ -0.13
LIG3-207ENST00000586119 EVI5O60447 810 aa14.27□□□□□ -0.13
LIG3-207ENST00000586119 CYP2B6P20813 491 aa14.27□□□□□ -0.13
LIG3-207ENST00000586119 GCLCP48506 637 aaPredicted RBP14.27□□□□□ -0.13
LIG3-207ENST00000586119 MNX1P50219 401 aaPredicted RBP14.27□□□□□ -0.13
LIG3-207ENST00000586119 SSH3Q8TE77 659 aa14.27□□□□□ -0.13
LIG3-207ENST00000586119 WDR18Q9BV38 432 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms