RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 ZNF512BQ96KM6 892 aaPredicted RBP13.96□□□□□ -0.17
SHMT1-208ENST00000582352 EPC1Q9H2F5 836 aa13.96□□□□□ -0.17
SHMT1-208ENST00000582352 MYO5AQ9Y4I1 1855 aaKnown RBP13.96□□□□□ -0.18
SHMT1-208ENST00000582352 CHD4Q14839 1912 aa13.96□□□□□ -0.18
SHMT1-208ENST00000582352 TBC1D8O95759 1140 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 PRR29P0C7W0 189 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 ITGA6P23229 1130 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 RILPL1Q5EBL4 403 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 NT5DC1Q5TFE4 455 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 CCDC12Q8WUD4 166 aaPredicted RBP13.95□□□□□ -0.18
SHMT1-208ENST00000582352 KIFC2Q96AC6 838 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 DESI2Q9BSY9 194 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 NAPBQ9H115 298 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.95□□□□□ -0.18
SHMT1-208ENST00000582352 SERTAD1Q9UHV2 236 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 FBXO2Q9UK22 296 aaPredicted RBP13.95□□□□□ -0.18
SHMT1-208ENST00000582352 RIPOR2Q9Y4F9 1068 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 CCDC175P0C221 793 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 IFNAR1P17181 557 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 PTPREP23469 700 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 MORC3Q14149 939 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 KARSQ15046 597 aaKnown RBP13.95□□□□□ -0.18
SHMT1-208ENST00000582352 KANK3Q6NY19 840 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 RABGGTAQ92696 567 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 WWC3Q9ULE0 1092 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 TNS2Q63HR2 1409 aa13.95□□□□□ -0.18
SHMT1-208ENST00000582352 OAS2P29728 719 aaKnown RBP13.94□□□□□ -0.18
SHMT1-208ENST00000582352 TOM1L2Q6ZVM7 507 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 RSRC2Q7L4I2 434 aaKnown RBP13.94□□□□□ -0.18
SHMT1-208ENST00000582352 DHX58Q96C10 678 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 GREM2Q9H772 168 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 CNNM2Q9H8M5 875 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 CEP131Q9UPN4 1083 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 A0A0U1RQG5 324 aaPredicted RBP13.94□□□□□ -0.18
SHMT1-208ENST00000582352 ANKRD18BA2A2Z9 1011 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 SASH3O75995 380 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 TOB1P50616 345 aaPredicted RBP13.94□□□□□ -0.18
SHMT1-208ENST00000582352 PLCD1P51178 756 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 GRIN1Q05586 938 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 GRAMD1CQ8IYS0 662 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 CCDC34Q96HJ3 373 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 STRBPQ96SI9 672 aaKnown RBP13.94□□□□□ -0.18
SHMT1-208ENST00000582352 FOXP1Q9H334 677 aaPredicted RBP13.94□□□□□ -0.18
SHMT1-208ENST00000582352 PODXL2Q9NZ53 605 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 KCNJ14Q9UNX9 436 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 LRP6O75581 1613 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 CTDSPL2Q05D32 466 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 GPS2Q13227 327 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 SMC1AQ14683 1233 aaKnown RBP13.94□□□□□ -0.18
SHMT1-208ENST00000582352 SART3Q15020 963 aaKnown RBP13.94□□□□□ -0.18
SHMT1-208ENST00000582352 RTN1Q16799 776 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 JAKMIP3Q5VZ66 844 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 TXLNBQ8N3L3 684 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 PARD6BQ9BYG5 372 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 KRT23Q9C075 422 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 INCENPQ9NQS7 918 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 ZSWIM5Q9P217 1185 aa13.94□□□□□ -0.18
SHMT1-208ENST00000582352 AKR1B15C9JRZ8 316 aaPredicted RBP13.93□□□□□ -0.18
SHMT1-208ENST00000582352 GUCY1A2P33402 732 aa13.93□□□□□ -0.18
SHMT1-208ENST00000582352 SARSP49591 514 aaKnown RBP13.93□□□□□ -0.18
SHMT1-208ENST00000582352 ALX1Q15699 326 aa13.93□□□□□ -0.18
SHMT1-208ENST00000582352 ZNF579Q8NAF0 562 aaKnown RBP13.93□□□□□ -0.18
SHMT1-208ENST00000582352 TOMM22Q9NS69 142 aa13.93□□□□□ -0.18
SHMT1-208ENST00000582352 SAMSN1Q9NSI8 373 aaKnown RBP13.93□□□□□ -0.18
SHMT1-208ENST00000582352 NID2Q14112 1375 aa13.93□□□□□ -0.18
SHMT1-208ENST00000582352 WDR17Q8IZU2 1322 aa13.93□□□□□ -0.18
SHMT1-208ENST00000582352 CDHR2Q9BYE9 1310 aa13.93□□□□□ -0.18
SHMT1-208ENST00000582352 UQCRFS1P1P0C7P4 283 aa13.93□□□□□ -0.18
SHMT1-208ENST00000582352 PHKA1P46020 1223 aa13.93□□□□□ -0.18
SHMT1-208ENST00000582352 CTSWP56202 376 aa13.93□□□□□ -0.18
SHMT1-208ENST00000582352 PANX2Q96RD6 677 aa13.93□□□□□ -0.18
SHMT1-208ENST00000582352 UBXN6Q9BZV1 441 aa13.93□□□□□ -0.18
SHMT1-208ENST00000582352 A0A1B0GTH6 734 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 TCRBV5S4A2TA0A5A2 114 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 ACTN4O43707 911 aaKnown RBP13.92□□□□□ -0.18
SHMT1-208ENST00000582352 MBD4O95243 580 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 ERCC5P28715 1186 aaPredicted RBP13.92□□□□□ -0.18
SHMT1-208ENST00000582352 ARID4AP29374 1257 aaPredicted RBP13.92□□□□□ -0.18
SHMT1-208ENST00000582352 TXLNAP40222 546 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 RRP12Q5JTH9 1297 aaKnown RBP13.92□□□□□ -0.18
SHMT1-208ENST00000582352 MFSD6Q6ZSS7 791 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 PPFIBP1Q86W92 1011 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 IFNL3Q8IZI9 196 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 TTLL11Q8NHH1 800 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 MRPL44Q9H9J2 332 aaKnown RBP13.92□□□□□ -0.18
SHMT1-208ENST00000582352 EPB41L4AQ9HCS5 686 aaPredicted RBP13.92□□□□□ -0.18
SHMT1-208ENST00000582352 PCDHB6Q9Y5E3 794 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 SYNRGQ9UMZ2 1314 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 ERICH2A1L162 156 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 SOWAHDA6NJG2 315 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 PDE8BO95263 885 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 DEXIO95424 95 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 ATP2B1P20020 1258 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 GPTP24298 496 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 NR1I3Q14994 352 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 AKNAD1Q5T1N1 836 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 SYNE4Q8N205 404 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 VGLL2Q8N8G2 317 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 NEK11Q8NG66 645 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 NAA15Q9BXJ9 866 aaKnown RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms