RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 GPR108Q9NPR9 543 aa13.06□□□□□ -0.32
RFFL-209ENST00000581265 RAI14Q9P0K7 980 aa13.06□□□□□ -0.32
RFFL-209ENST00000581265 TNNQ9UQP3 1299 aa13.06□□□□□ -0.32
RFFL-209ENST00000581265 STXBP5LQ9Y2K9 1186 aa13.06□□□□□ -0.32
RFFL-209ENST00000581265 UBE2Q1Q7Z7E8 422 aa13.05□□□□□ -0.32
RFFL-209ENST00000581265 SLAIN1Q8ND83 568 aa13.05□□□□□ -0.32
RFFL-209ENST00000581265 PXYLP1Q8TE99 480 aa13.05□□□□□ -0.32
RFFL-209ENST00000581265 CLUAP1Q96AJ1 413 aa13.05□□□□□ -0.32
RFFL-209ENST00000581265 LRP2BPQ9P2M1 347 aa13.05□□□□□ -0.32
RFFL-209ENST00000581265 GABRQQ9UN88 632 aa13.05□□□□□ -0.32
RFFL-209ENST00000581265 AGTPBP1Q9UPW5 1226 aa13.05□□□□□ -0.32
RFFL-209ENST00000581265 COL2A1P02458 1487 aaPredicted RBP13.04□□□□□ -0.32
RFFL-209ENST00000581265 DOCK2Q92608 1830 aa13.04□□□□□ -0.32
RFFL-209ENST00000581265 TFRCP02786 760 aaKnown RBP13.04□□□□□ -0.32
RFFL-209ENST00000581265 CAP2P40123 477 aa13.04□□□□□ -0.32
RFFL-209ENST00000581265 FLT3LGP49771 235 aa13.04□□□□□ -0.32
RFFL-209ENST00000581265 SPP2Q13103 211 aa13.04□□□□□ -0.32
RFFL-209ENST00000581265 IRF5Q13568 498 aa13.04□□□□□ -0.32
RFFL-209ENST00000581265 POLA2Q14181 598 aa13.04□□□□□ -0.32
RFFL-209ENST00000581265 GPR153Q6NV75 609 aa13.04□□□□□ -0.32
RFFL-209ENST00000581265 Q7L0L9 218 aa13.04□□□□□ -0.32
RFFL-209ENST00000581265 PROCA1Q8NCQ7 364 aaPredicted RBP13.04□□□□□ -0.32
RFFL-209ENST00000581265 ZNF280CQ8ND82 737 aa13.04□□□□□ -0.32
RFFL-209ENST00000581265 SMCR8Q8TEV9 937 aaPredicted RBP13.04□□□□□ -0.32
RFFL-209ENST00000581265 U2AF1L4Q8WU68 220 aaKnown RBP13.04□□□□□ -0.32
RFFL-209ENST00000581265 TBC1D2Q9BYX2 928 aa13.04□□□□□ -0.32
RFFL-209ENST00000581265 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.04□□□□□ -0.32
RFFL-209ENST00000581265 FAM196BA6NMK8 535 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 TNPO2O14787 897 aaKnown RBP13.03□□□□□ -0.32
RFFL-209ENST00000581265 ADCY3O60266 1144 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 IGSF3O75054 1194 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 CAPN2P17655 700 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 PPP4CP60510 307 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 ATP8B2P98198 1209 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 TREML2Q5T2D2 321 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 ZKSCAN2Q63HK3 967 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 CCDC84Q86UT8 332 aaPredicted RBP13.03□□□□□ -0.32
RFFL-209ENST00000581265 TEX11Q8IYF3 940 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 TMEM57Q8N5G2 664 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 SSH3Q8TE77 659 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 ZNF512BQ96KM6 892 aaPredicted RBP13.03□□□□□ -0.32
RFFL-209ENST00000581265 DHX36Q9H2U1 1008 aaKnown RBP13.03□□□□□ -0.32
RFFL-209ENST00000581265 PI4KBQ9UBF8 816 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 HERC5Q9UII4 1024 aaKnown RBP13.03□□□□□ -0.32
RFFL-209ENST00000581265 PNMA3Q9UL41 463 aa13.03□□□□□ -0.32
RFFL-209ENST00000581265 USP17L5A8MUK1 530 aa13.02□□□□□ -0.33
RFFL-209ENST00000581265 SGPL1O95470 568 aa13.02□□□□□ -0.33
RFFL-209ENST00000581265 BAG3O95817 575 aa13.02□□□□□ -0.33
RFFL-209ENST00000581265 PLCG2P16885 1265 aa13.02□□□□□ -0.33
RFFL-209ENST00000581265 GCLCP48506 637 aaPredicted RBP13.02□□□□□ -0.33
RFFL-209ENST00000581265 RRP1BQ14684 758 aaKnown RBP13.02□□□□□ -0.33
RFFL-209ENST00000581265 FAM110CQ1W6H9 321 aa13.02□□□□□ -0.33
RFFL-209ENST00000581265 TNNI3KQ59H18 835 aa13.02□□□□□ -0.33
RFFL-209ENST00000581265 SH3D19Q5HYK7 790 aa13.02□□□□□ -0.33
RFFL-209ENST00000581265 CCDC158Q5M9N0 1113 aa13.02□□□□□ -0.33
RFFL-209ENST00000581265 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.02□□□□□ -0.33
RFFL-209ENST00000581265 ANKRD13CQ8N6S4 541 aa13.02□□□□□ -0.33
RFFL-209ENST00000581265 SH3RF3Q8TEJ3 882 aaPredicted RBP13.02□□□□□ -0.33
RFFL-209ENST00000581265 FPGT-TNNI3KV9GXZ4 949 aa13.02□□□□□ -0.33
RFFL-209ENST00000581265 PHIPQ8WWQ0 1821 aa13.02□□□□□ -0.33
RFFL-209ENST00000581265 PTPRFP10586 1907 aa13.01□□□□□ -0.33
RFFL-209ENST00000581265 CYP2E1P05181 493 aaPredicted RBP13.01□□□□□ -0.33
RFFL-209ENST00000581265 PABPC4Q13310 644 aaKnown RBP eCLIP13.01□□□□□ -0.33
RFFL-209ENST00000581265 TTC39AQ5SRH9 613 aa13.01□□□□□ -0.33
RFFL-209ENST00000581265 NAA16Q6N069 864 aaPredicted RBP13.01□□□□□ -0.33
RFFL-209ENST00000581265 METTL16Q86W50 562 aaKnown RBP13.01□□□□□ -0.33
RFFL-209ENST00000581265 FOXP4Q8IVH2 680 aaPredicted RBP13.01□□□□□ -0.33
RFFL-209ENST00000581265 COA7Q96BR5 231 aa13.01□□□□□ -0.33
RFFL-209ENST00000581265 DBNDD2Q9BQY9 259 aa13.01□□□□□ -0.33
RFFL-209ENST00000581265 NOL10Q9BSC4 688 aaKnown RBP13.01□□□□□ -0.33
RFFL-209ENST00000581265 WDR18Q9BV38 432 aa13.01□□□□□ -0.33
RFFL-209ENST00000581265 UNC93B1Q9H1C4 597 aa13.01□□□□□ -0.33
RFFL-209ENST00000581265 SNRKQ9NRH2 765 aa13.01□□□□□ -0.33
RFFL-209ENST00000581265 NOP58Q9Y2X3 529 aaKnown RBP13.01□□□□□ -0.33
RFFL-209ENST00000581265 DOCK1Q14185 1865 aa13.01□□□□□ -0.33
RFFL-209ENST00000581265 MGAMO43451 1857 aa13□□□□□ -0.33
RFFL-209ENST00000581265 SURF6O75683 361 aaKnown RBP13□□□□□ -0.33
RFFL-209ENST00000581265 ELNP15502 786 aa13□□□□□ -0.33
RFFL-209ENST00000581265 HMGCS2P54868 508 aa13□□□□□ -0.33
RFFL-209ENST00000581265 AS3MTQ9HBK9 375 aa13□□□□□ -0.33
RFFL-209ENST00000581265 AATFQ9NY61 560 aaKnown RBP eCLIP13□□□□□ -0.33
RFFL-209ENST00000581265 DOCK3Q8IZD9 2030 aa13□□□□□ -0.33
RFFL-209ENST00000581265 CUL9Q8IWT3 2517 aa12.99□□□□□ -0.33
RFFL-209ENST00000581265 INHAP05111 366 aa12.99□□□□□ -0.33
RFFL-209ENST00000581265 ASNSP08243 561 aa12.99□□□□□ -0.33
RFFL-209ENST00000581265 BMP8BP34820 402 aa12.99□□□□□ -0.33
RFFL-209ENST00000581265 BACE1P56817 501 aa12.99□□□□□ -0.33
RFFL-209ENST00000581265 OS9Q13438 667 aaPredicted RBP12.99□□□□□ -0.33
RFFL-209ENST00000581265 ADGRA1Q86SQ6 560 aa12.99□□□□□ -0.33
RFFL-209ENST00000581265 C7orf61Q8IZ16 206 aa12.99□□□□□ -0.33
RFFL-209ENST00000581265 TGFBRAP1Q8WUH2 860 aa12.99□□□□□ -0.33
RFFL-209ENST00000581265 ASCC2Q9H1I8 757 aaPredicted RBP12.99□□□□□ -0.33
RFFL-209ENST00000581265 PAK6Q9NQU5 681 aaPredicted RBP12.99□□□□□ -0.33
RFFL-209ENST00000581265 GINM1Q9NU53 330 aa12.99□□□□□ -0.33
RFFL-209ENST00000581265 MTMR10Q9NXD2 777 aa12.99□□□□□ -0.33
RFFL-209ENST00000581265 GJD2Q9UKL4 321 aa12.99□□□□□ -0.33
RFFL-209ENST00000581265 SZT2Q5T011 3432 aa12.98□□□□□ -0.33
RFFL-209ENST00000581265 C19orf81C9J6K1 198 aa12.98□□□□□ -0.33
RFFL-209ENST00000581265 HOXA7P31268 230 aaPredicted RBP12.98□□□□□ -0.33
RFFL-209ENST00000581265 JAG1P78504 1218 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms