RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 DDX60LQ5H9U9 1706 aaKnown RBP29.71■■■□□ 2.35
SHMT1-207ENST00000580002 RALYLQ86SE5 291 aaKnown RBP29.7■■■□□ 2.35
SHMT1-207ENST00000580002 VEZTQ9HBM0 779 aa29.7■■■□□ 2.35
SHMT1-207ENST00000580002 PRC1O43663 620 aa29.69■■■□□ 2.34
SHMT1-207ENST00000580002 FGRP09769 529 aa29.69■■■□□ 2.34
SHMT1-207ENST00000580002 MYH1P12882 1939 aa29.69■■■□□ 2.34
SHMT1-207ENST00000580002 LARGE1O95461 756 aa29.69■■■□□ 2.34
SHMT1-207ENST00000580002 TRDNQ13061 729 aa29.69■■■□□ 2.34
SHMT1-207ENST00000580002 ZKSCAN3Q9BRR0 538 aa29.69■■■□□ 2.34
SHMT1-207ENST00000580002 CDAN1Q8IWY9 1227 aa29.68■■■□□ 2.34
SHMT1-207ENST00000580002 SENP2Q9HC62 589 aa29.68■■■□□ 2.34
SHMT1-207ENST00000580002 K7ELQ4 463 aaPredicted RBP29.67■■■□□ 2.34
SHMT1-207ENST00000580002 HIRAP54198 1017 aaPredicted RBP29.67■■■□□ 2.34
SHMT1-207ENST00000580002 KIF4BQ2VIQ3 1234 aa29.67■■■□□ 2.34
SHMT1-207ENST00000580002 FAM47AQ5JRC9 791 aa29.67■■■□□ 2.34
SHMT1-207ENST00000580002 LAMB1P07942 1786 aa29.67■■■□□ 2.34
SHMT1-207ENST00000580002 CNTNAP1P78357 1384 aa29.67■■■□□ 2.34
SHMT1-207ENST00000580002 H7C1D1 291 aa29.67■■■□□ 2.34
SHMT1-207ENST00000580002 HMGB1P09429 215 aaKnown RBP29.67■■■□□ 2.34
SHMT1-207ENST00000580002 BECN1Q14457 450 aa29.67■■■□□ 2.34
SHMT1-207ENST00000580002 DTNBO60941 627 aa29.66■■■□□ 2.34
SHMT1-207ENST00000580002 MCM5P33992 734 aa29.66■■■□□ 2.34
SHMT1-207ENST00000580002 RNF41Q9H4P4 317 aaPredicted RBP29.66■■■□□ 2.34
SHMT1-207ENST00000580002 FOXD4L1Q9NU39 408 aa29.66■■■□□ 2.34
SHMT1-207ENST00000580002 TPCN1Q9ULQ1 816 aa29.66■■■□□ 2.34
SHMT1-207ENST00000580002 FAM196BA6NMK8 535 aa29.65■■■□□ 2.34
SHMT1-207ENST00000580002 RANBP6O60518 1105 aaKnown RBP29.65■■■□□ 2.34
SHMT1-207ENST00000580002 CDK8P49336 464 aa29.65■■■□□ 2.34
SHMT1-207ENST00000580002 ZSCAN29Q8IWY8 852 aaPredicted RBP29.65■■■□□ 2.34
SHMT1-207ENST00000580002 AMOTL1Q8IY63 956 aa29.65■■■□□ 2.34
SHMT1-207ENST00000580002 BRF1Q92994 677 aa29.65■■■□□ 2.34
SHMT1-207ENST00000580002 TMX3Q96JJ7 454 aa29.65■■■□□ 2.34
SHMT1-207ENST00000580002 KRT23Q9C075 422 aa29.65■■■□□ 2.34
SHMT1-207ENST00000580002 ROBO3Q96MS0 1386 aa29.65■■■□□ 2.34
SHMT1-207ENST00000580002 CNNM2Q9H8M5 875 aa29.64■■■□□ 2.34
SHMT1-207ENST00000580002 GABPAQ06546 454 aa29.64■■■□□ 2.34
SHMT1-207ENST00000580002 C16orf86Q6ZW13 317 aa29.64■■■□□ 2.34
SHMT1-207ENST00000580002 TMEM39BQ9GZU3 492 aa29.64■■■□□ 2.34
SHMT1-207ENST00000580002 ALDH8A1Q9H2A2 487 aaPredicted RBP29.64■■■□□ 2.34
SHMT1-207ENST00000580002 TMOD2Q9NZR1 351 aa29.64■■■□□ 2.34
SHMT1-207ENST00000580002 ORC4O43929 436 aa29.63■■■□□ 2.33
SHMT1-207ENST00000580002 ENTPD3O75355 529 aa29.63■■■□□ 2.33
SHMT1-207ENST00000580002 NPM3O75607 178 aaKnown RBP29.63■■■□□ 2.33
SHMT1-207ENST00000580002 APOBRQ0VD83 1088 aa29.63■■■□□ 2.33
SHMT1-207ENST00000580002 TTC6Q86TZ1 520 aa29.63■■■□□ 2.33
SHMT1-207ENST00000580002 NMT2O60551 498 aa29.62■■■□□ 2.33
SHMT1-207ENST00000580002 SLC3A2P08195 630 aaKnown RBP29.62■■■□□ 2.33
SHMT1-207ENST00000580002 IGDCC4Q8TDY8 1250 aa29.62■■■□□ 2.33
SHMT1-207ENST00000580002 DNAJC18Q9H819 358 aa29.62■■■□□ 2.33
SHMT1-207ENST00000580002 HACL1Q9UJ83 578 aa29.62■■■□□ 2.33
SHMT1-207ENST00000580002 MYO1BO43795 1136 aa29.62■■■□□ 2.33
SHMT1-207ENST00000580002 RASA1P20936 1047 aa29.62■■■□□ 2.33
SHMT1-207ENST00000580002 PDE4BQ07343 736 aa29.62■■■□□ 2.33
SHMT1-207ENST00000580002 ME3Q16798 604 aa29.62■■■□□ 2.33
SHMT1-207ENST00000580002 AGXT2Q9BYV1 514 aa29.62■■■□□ 2.33
SHMT1-207ENST00000580002 MKNK2Q9HBH9 465 aa29.62■■■□□ 2.33
SHMT1-207ENST00000580002 LIMCH1Q9UPQ0 1083 aa29.62■■■□□ 2.33
SHMT1-207ENST00000580002 MMP14P50281 582 aa29.61■■■□□ 2.33
SHMT1-207ENST00000580002 FGD1P98174 961 aa29.61■■■□□ 2.33
SHMT1-207ENST00000580002 ESR2Q92731 530 aa29.61■■■□□ 2.33
SHMT1-207ENST00000580002 DPY19L2Q6NUT2 758 aa29.6■■■□□ 2.33
SHMT1-207ENST00000580002 FAM151AQ8WW52 585 aa29.6■■■□□ 2.33
SHMT1-207ENST00000580002 BRPF3Q9ULD4 1205 aa29.6■■■□□ 2.33
SHMT1-207ENST00000580002 SH2B2O14492 632 aaPredicted RBP29.59■■■□□ 2.33
SHMT1-207ENST00000580002 ST3GAL1Q11201 340 aa29.59■■■□□ 2.33
SHMT1-207ENST00000580002 RAB11FIP4Q86YS3 637 aa29.59■■■□□ 2.33
SHMT1-207ENST00000580002 NECAB1Q8N987 351 aa29.59■■■□□ 2.33
SHMT1-207ENST00000580002 PGAP2Q9UHJ9 254 aa29.59■■■□□ 2.33
SHMT1-207ENST00000580002 SERPINB13Q9UIV8 391 aa29.59■■■□□ 2.33
SHMT1-207ENST00000580002 SIPA1L1O43166 1804 aa29.59■■■□□ 2.33
SHMT1-207ENST00000580002 TFAP4Q01664 338 aa29.59■■■□□ 2.33
SHMT1-207ENST00000580002 STK3Q13188 491 aa29.59■■■□□ 2.33
SHMT1-207ENST00000580002 GLTPD2A6NH11 291 aa29.58■■■□□ 2.33
SHMT1-207ENST00000580002 IFIT3O14879 490 aaKnown RBP29.58■■■□□ 2.33
SHMT1-207ENST00000580002 HLA-DOAP06340 250 aa29.58■■■□□ 2.33
SHMT1-207ENST00000580002 SHMT1P34896 483 aa29.58■■■□□ 2.33
SHMT1-207ENST00000580002 MCM2P49736 904 aa29.58■■■□□ 2.33
SHMT1-207ENST00000580002 RASA3Q14644 834 aa29.58■■■□□ 2.33
SHMT1-207ENST00000580002 SHROOM1Q2M3G4 852 aaPredicted RBP29.58■■■□□ 2.33
SHMT1-207ENST00000580002 ANGEL2Q5VTE6 544 aaKnown RBP29.58■■■□□ 2.33
SHMT1-207ENST00000580002 DHX36Q9H2U1 1008 aaKnown RBP29.58■■■□□ 2.33
SHMT1-207ENST00000580002 TMEM67Q5HYA8 995 aa29.57■■■□□ 2.32
SHMT1-207ENST00000580002 FKBP1CQ5VVH2 108 aa29.57■■■□□ 2.32
SHMT1-207ENST00000580002 CSRNP1Q96S65 589 aa29.57■■■□□ 2.32
SHMT1-207ENST00000580002 LY9Q9HBG7 655 aa29.57■■■□□ 2.32
SHMT1-207ENST00000580002 PI4KBQ9UBF8 816 aa29.57■■■□□ 2.32
SHMT1-207ENST00000580002 DAXXQ9UER7 740 aaPredicted RBP29.57■■■□□ 2.32
SHMT1-207ENST00000580002 ATRNL1Q5VV63 1379 aa29.57■■■□□ 2.32
SHMT1-207ENST00000580002 PCP11498 1178 aaKnown RBP29.57■■■□□ 2.32
SHMT1-207ENST00000580002 LMOD1P29536 600 aaPredicted RBP29.57■■■□□ 2.32
SHMT1-207ENST00000580002 IL17RBQ9NRM6 502 aa29.57■■■□□ 2.32
SHMT1-207ENST00000580002 WDR19Q8NEZ3 1342 aa29.56■■■□□ 2.32
SHMT1-207ENST00000580002 TSPY2A6NKD2 308 aa29.56■■■□□ 2.32
SHMT1-207ENST00000580002 PRAMEF18Q5VWM3 479 aa29.56■■■□□ 2.32
SHMT1-207ENST00000580002 ZNF444Q8N0Y2 327 aaPredicted RBP29.56■■■□□ 2.32
SHMT1-207ENST00000580002 POTECB2RU33 542 aa29.55■■■□□ 2.32
SHMT1-207ENST00000580002 ANKRD1Q15327 319 aa29.55■■■□□ 2.32
SHMT1-207ENST00000580002 DLK2Q6UY11 383 aa29.55■■■□□ 2.32
SHMT1-207ENST00000580002 RRP1BQ14684 758 aaKnown RBP29.54■■■□□ 2.32
SHMT1-207ENST00000580002 SEC23AQ15436 765 aa29.54■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms