RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 PTPRAP18433 802 aa18■□□□□ 0.47
SS18-212ENST00000579061 TAF1CQ15572 869 aaPredicted RBP18■□□□□ 0.47
SS18-212ENST00000579061 PKN2Q16513 984 aaKnown RBP18■□□□□ 0.47
SS18-212ENST00000579061 SLC9C2Q5TAH2 1124 aa18■□□□□ 0.47
SS18-212ENST00000579061 FAM43AQ8N2R8 423 aa18■□□□□ 0.47
SS18-212ENST00000579061 MIGA1Q8NAN2 632 aa18■□□□□ 0.47
SS18-212ENST00000579061 BCL11AQ9H165 835 aa18■□□□□ 0.47
SS18-212ENST00000579061 ZFYVE28Q9HCC9 887 aa18■□□□□ 0.47
SS18-212ENST00000579061 BTBD19C9JJ37 291 aa17.99■□□□□ 0.47
SS18-212ENST00000579061 SLURP2P0DP57 97 aa17.99■□□□□ 0.47
SS18-212ENST00000579061 RIOK1Q9BRS2 568 aaKnown RBP17.99■□□□□ 0.47
SS18-212ENST00000579061 TBC1D2Q9BYX2 928 aa17.99■□□□□ 0.47
SS18-212ENST00000579061 ECHDC1Q9NTX5 307 aa17.99■□□□□ 0.47
SS18-212ENST00000579061 ZHX2Q9Y6X8 837 aa17.99■□□□□ 0.47
SS18-212ENST00000579061 MAGEB6P1A0A0J9YX57 407 aa17.98■□□□□ 0.47
SS18-212ENST00000579061 TCRBV5S4A2TA0A5A2 114 aa17.98■□□□□ 0.47
SS18-212ENST00000579061 CAPN15O75808 1086 aa17.98■□□□□ 0.47
SS18-212ENST00000579061 HLA-DOAP06340 250 aa17.98■□□□□ 0.47
SS18-212ENST00000579061 USP5P45974 858 aa17.98■□□□□ 0.47
SS18-212ENST00000579061 ANKRD23Q86SG2 305 aa17.98■□□□□ 0.47
SS18-212ENST00000579061 EDC3Q96F86 508 aaKnown RBP17.98■□□□□ 0.47
SS18-212ENST00000579061 GPATCH3Q96I76 525 aa17.98■□□□□ 0.47
SS18-212ENST00000579061 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.98■□□□□ 0.47
SS18-212ENST00000579061 AFG3L2Q9Y4W6 797 aa17.98■□□□□ 0.47
SS18-212ENST00000579061 ZNF532Q9HCE3 1301 aa17.98■□□□□ 0.47
SS18-212ENST00000579061 CAP2P40123 477 aa17.97■□□□□ 0.47
SS18-212ENST00000579061 MOGSQ13724 837 aa17.97■□□□□ 0.47
SS18-212ENST00000579061 ERO1AQ96HE7 468 aa17.97■□□□□ 0.47
SS18-212ENST00000579061 GINM1Q9NU53 330 aa17.97■□□□□ 0.47
SS18-212ENST00000579061 PALD1Q9ULE6 856 aa17.97■□□□□ 0.47
SS18-212ENST00000579061 A0A0G2JLL6 359 aaPredicted RBP17.96■□□□□ 0.47
SS18-212ENST00000579061 FAM196BA6NMK8 535 aa17.96■□□□□ 0.47
SS18-212ENST00000579061 ADD2P35612 726 aa17.96■□□□□ 0.47
SS18-212ENST00000579061 SP3Q02447 781 aa17.96■□□□□ 0.47
SS18-212ENST00000579061 UBE3CQ15386 1083 aa17.96■□□□□ 0.47
SS18-212ENST00000579061 ZSCAN25Q6NSZ9 544 aa17.96■□□□□ 0.47
SS18-212ENST00000579061 FASTKD5Q7L8L6 764 aaKnown RBP17.96■□□□□ 0.47
SS18-212ENST00000579061 PRRT2Q7Z6L0 340 aaPredicted RBP17.96■□□□□ 0.47
SS18-212ENST00000579061 CRACR2BQ8N4Y2 399 aaPredicted RBP17.96■□□□□ 0.47
SS18-212ENST00000579061 CRNKL1Q9BZJ0 848 aaKnown RBP17.96■□□□□ 0.47
SS18-212ENST00000579061 NAV1Q8NEY1 1877 aa17.96■□□□□ 0.47
SS18-212ENST00000579061 DDX60LQ5H9U9 1706 aaKnown RBP17.95■□□□□ 0.46
SS18-212ENST00000579061 TLR2O60603 784 aa17.95■□□□□ 0.46
SS18-212ENST00000579061 HDAC1Q13547 482 aaPredicted RBP17.95■□□□□ 0.46
SS18-212ENST00000579061 TTC6Q86TZ1 520 aa17.95■□□□□ 0.46
SS18-212ENST00000579061 TRIM34Q9BYJ4 488 aa17.95■□□□□ 0.46
SS18-212ENST00000579061 EHD4Q9H223 541 aa17.95■□□□□ 0.46
SS18-212ENST00000579061 DNAJC18Q9H819 358 aa17.95■□□□□ 0.46
SS18-212ENST00000579061 SAP30BPQ9UHR5 308 aaKnown RBP17.95■□□□□ 0.46
SS18-212ENST00000579061 TTC41PQ6P2S7 1318 aa17.95■□□□□ 0.46
SS18-212ENST00000579061 PDHXO00330 501 aa17.94■□□□□ 0.46
SS18-212ENST00000579061 ASNSP08243 561 aa17.94■□□□□ 0.46
SS18-212ENST00000579061 RRP1BQ14684 758 aaKnown RBP17.94■□□□□ 0.46
SS18-212ENST00000579061 GCC1Q96CN9 775 aa17.94■□□□□ 0.46
SS18-212ENST00000579061 USP17L5A8MUK1 530 aa17.93■□□□□ 0.46
SS18-212ENST00000579061 ARHGEF6Q15052 776 aa17.93■□□□□ 0.46
SS18-212ENST00000579061 GPAT2Q6NUI2 795 aa17.93■□□□□ 0.46
SS18-212ENST00000579061 FBXO46Q6PJ61 603 aaPredicted RBP17.93■□□□□ 0.46
SS18-212ENST00000579061 AS3MTQ9HBK9 375 aa17.93■□□□□ 0.46
SS18-212ENST00000579061 SERPINB13Q9UIV8 391 aa17.93■□□□□ 0.46
SS18-212ENST00000579061 SLC45A1Q9Y2W3 748 aa17.93■□□□□ 0.46
SS18-212ENST00000579061 ERC2O15083 957 aa17.92■□□□□ 0.46
SS18-212ENST00000579061 OTOP1Q7RTM1 612 aa17.92■□□□□ 0.46
SS18-212ENST00000579061 LCORLQ8N3X6 602 aa17.92■□□□□ 0.46
SS18-212ENST00000579061 KBTBD3Q8NAB2 608 aa17.92■□□□□ 0.46
SS18-212ENST00000579061 ZNF280CQ8ND82 737 aa17.92■□□□□ 0.46
SS18-212ENST00000579061 ZBTB47Q9UFB7 747 aaPredicted RBP17.92■□□□□ 0.46
SS18-212ENST00000579061 TAOK2Q9UL54 1235 aa17.92■□□□□ 0.46
SS18-212ENST00000579061 LOC285556D6RIA3 1793 aa17.91■□□□□ 0.46
SS18-212ENST00000579061 TRIM75PA6NK02 468 aa17.91■□□□□ 0.46
SS18-212ENST00000579061 CCDC85CA6NKD9 419 aa17.91■□□□□ 0.46
SS18-212ENST00000579061 TATDN1Q6P1N9 297 aa17.91■□□□□ 0.46
SS18-212ENST00000579061 PROCA1Q8NCQ7 364 aaPredicted RBP17.91■□□□□ 0.46
SS18-212ENST00000579061 CD99L2Q8TCZ2 262 aa17.91■□□□□ 0.46
SS18-212ENST00000579061 PARK7Q99497 189 aaKnown RBP17.91■□□□□ 0.46
SS18-212ENST00000579061 WDR18Q9BV38 432 aa17.91■□□□□ 0.46
SS18-212ENST00000579061 DCP1AQ9NPI6 582 aaPredicted RBP17.91■□□□□ 0.46
SS18-212ENST00000579061 ATP8A2Q9NTI2 1148 aa17.91■□□□□ 0.46
SS18-212ENST00000579061 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.91■□□□□ 0.46
SS18-212ENST00000579061 TRIM17Q9Y577 477 aa17.91■□□□□ 0.46
SS18-212ENST00000579061 ADGRA2Q96PE1 1338 aa17.91■□□□□ 0.46
SS18-212ENST00000579061 GLRX3O76003 335 aaKnown RBP17.9■□□□□ 0.46
SS18-212ENST00000579061 MBD4O95243 580 aa17.9■□□□□ 0.46
SS18-212ENST00000579061 POLR3DP05423 398 aaPredicted RBP17.9■□□□□ 0.46
SS18-212ENST00000579061 SPP2Q13103 211 aa17.9■□□□□ 0.46
SS18-212ENST00000579061 SH3D19Q5HYK7 790 aa17.9■□□□□ 0.46
SS18-212ENST00000579061 C17orf99Q6UX52 265 aa17.9■□□□□ 0.46
SS18-212ENST00000579061 GADL1Q6ZQY3 521 aa17.9■□□□□ 0.46
SS18-212ENST00000579061 CCDC84Q86UT8 332 aaPredicted RBP17.9■□□□□ 0.46
SS18-212ENST00000579061 ARMT1Q9H993 441 aa17.9■□□□□ 0.46
SS18-212ENST00000579061 EFCC1Q9HA90 598 aa17.9■□□□□ 0.46
SS18-212ENST00000579061 BAZ2AQ9UIF9 1905 aaKnown RBP17.9■□□□□ 0.46
SS18-212ENST00000579061 ZFYP08048 801 aaPredicted RBP17.89■□□□□ 0.45
SS18-212ENST00000579061 KIF22Q14807 665 aa17.89■□□□□ 0.45
SS18-212ENST00000579061 SLC4A8Q2Y0W8 1093 aa17.89■□□□□ 0.45
SS18-212ENST00000579061 LRRFIP1Q32MZ4 808 aaKnown RBP17.89■□□□□ 0.45
SS18-212ENST00000579061 ANKRD45Q5TZF3 282 aa17.89■□□□□ 0.45
SS18-212ENST00000579061 TSHZ3Q63HK5 1081 aa17.89■□□□□ 0.45
SS18-212ENST00000579061 PI4K2BQ8TCG2 481 aa17.89■□□□□ 0.45
SS18-212ENST00000579061 SDR42E1Q8WUS8 393 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms