RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 GOLGB1Q14789 3259 aaKnown RBP18.01■□□□□ 0.47
SS18-206ENST00000577572 DDX60LQ5H9U9 1706 aaKnown RBP18.01■□□□□ 0.47
SS18-206ENST00000577572 LIFRP42702 1097 aa18.01■□□□□ 0.47
SS18-206ENST00000577572 PLCD1P51178 756 aa18.01■□□□□ 0.47
SS18-206ENST00000577572 NFIAQ12857 509 aa18.01■□□□□ 0.47
SS18-206ENST00000577572 PICALMQ13492 652 aa18.01■□□□□ 0.47
SS18-206ENST00000577572 KIF4BQ2VIQ3 1234 aa18.01■□□□□ 0.47
SS18-206ENST00000577572 IQCA1Q86XH1 822 aa18.01■□□□□ 0.47
SS18-206ENST00000577572 ADARB2Q9NS39 739 aaKnown RBP18.01■□□□□ 0.47
SS18-206ENST00000577572 ZSWIM5Q9P217 1185 aa18.01■□□□□ 0.47
SS18-206ENST00000577572 SERPINB13Q9UIV8 391 aa18.01■□□□□ 0.47
SS18-206ENST00000577572 NAV1Q8NEY1 1877 aa18.01■□□□□ 0.47
SS18-206ENST00000577572 NEDD4P46934 1319 aa18■□□□□ 0.47
SS18-206ENST00000577572 GLTPD2A6NH11 291 aa18■□□□□ 0.47
SS18-206ENST00000577572 B4E1Z4 1266 aa18■□□□□ 0.47
SS18-206ENST00000577572 PRC1O43663 620 aa18■□□□□ 0.47
SS18-206ENST00000577572 AK2P54819 239 aa18■□□□□ 0.47
SS18-206ENST00000577572 FGD1P98174 961 aa18■□□□□ 0.47
SS18-206ENST00000577572 ZNF444Q8N0Y2 327 aaPredicted RBP18■□□□□ 0.47
SS18-206ENST00000577572 MKNK2Q9HBH9 465 aa18■□□□□ 0.47
SS18-206ENST00000577572 SAP30BPQ9UHR5 308 aaKnown RBP18■□□□□ 0.47
SS18-206ENST00000577572 PCDHAC2Q9Y5I4 1007 aa18■□□□□ 0.47
SS18-206ENST00000577572 PITPNM2Q9BZ72 1349 aa17.99■□□□□ 0.47
SS18-206ENST00000577572 LAMB1P07942 1786 aa17.99■□□□□ 0.47
SS18-206ENST00000577572 CYP2D7A0A087X1C5 515 aa17.99■□□□□ 0.47
SS18-206ENST00000577572 ERICH2A1L162 156 aa17.99■□□□□ 0.47
SS18-206ENST00000577572 KDM4AO75164 1064 aa17.99■□□□□ 0.47
SS18-206ENST00000577572 CYP2D6P10635 497 aa17.99■□□□□ 0.47
SS18-206ENST00000577572 PPP4R3BQ5MIZ7 849 aa17.99■□□□□ 0.47
SS18-206ENST00000577572 APOBEC3FQ8IUX4 373 aaKnown RBP17.99■□□□□ 0.47
SS18-206ENST00000577572 HOOK2Q96ED9 719 aa17.99■□□□□ 0.47
SS18-206ENST00000577572 CCDC17Q96LX7 622 aa17.99■□□□□ 0.47
SS18-206ENST00000577572 TCP11L1Q9NUJ3 509 aa17.99■□□□□ 0.47
SS18-206ENST00000577572 HERC5Q9UII4 1024 aaKnown RBP17.99■□□□□ 0.47
SS18-206ENST00000577572 ANGEL1Q9UNK9 670 aaKnown RBP17.99■□□□□ 0.47
SS18-206ENST00000577572 PPP2R3BQ9Y5P8 575 aa17.99■□□□□ 0.47
SS18-206ENST00000577572 ECM29Q5VYK3 1845 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 TBC1D12O60347 775 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 DDNO94850 711 aaPredicted RBP17.98■□□□□ 0.47
SS18-206ENST00000577572 CD2BP2O95400 341 aaKnown RBP17.98■□□□□ 0.47
SS18-206ENST00000577572 CDK8P49336 464 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 RCAN1P53805 252 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 ANTXR2P58335 489 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 TOB2Q14106 344 aaPredicted RBP17.98■□□□□ 0.47
SS18-206ENST00000577572 NBPF9Q3BBW0 867 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 Q6ZUG5 572 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 SGMS1Q86VZ5 419 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 ZNF274Q96GC6 653 aaPredicted RBP17.98■□□□□ 0.47
SS18-206ENST00000577572 INTS4Q96HW7 963 aaKnown RBP17.98■□□□□ 0.47
SS18-206ENST00000577572 TMX3Q96JJ7 454 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 UBAC1Q9BSL1 405 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 TOMM22Q9NS69 142 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 CDK5RAP2Q96SN8 1893 aa17.98■□□□□ 0.47
SS18-206ENST00000577572 ADAMTSL1Q8N6G6 1762 aa17.97■□□□□ 0.47
SS18-206ENST00000577572 IQCA1LA6NCM1 817 aa17.97■□□□□ 0.47
SS18-206ENST00000577572 CPA1P15085 419 aa17.97■□□□□ 0.47
SS18-206ENST00000577572 CUL4AQ13619 759 aa17.97■□□□□ 0.47
SS18-206ENST00000577572 RRP12Q5JTH9 1297 aaKnown RBP17.97■□□□□ 0.47
SS18-206ENST00000577572 USP50Q70EL3 339 aaPredicted RBP17.97■□□□□ 0.47
SS18-206ENST00000577572 ZSCAN29Q8IWY8 852 aaPredicted RBP17.97■□□□□ 0.47
SS18-206ENST00000577572 IGDCC4Q8TDY8 1250 aa17.97■□□□□ 0.47
SS18-206ENST00000577572 ZC3H15Q8WU90 426 aaKnown RBP17.97■□□□□ 0.47
SS18-206ENST00000577572 BAZ2AQ9UIF9 1905 aaKnown RBP17.96■□□□□ 0.47
SS18-206ENST00000577572 CNTNAP1P78357 1384 aa17.96■□□□□ 0.47
SS18-206ENST00000577572 PLIN4Q96Q06 1357 aa17.96■□□□□ 0.47
SS18-206ENST00000577572 CLRN2A0PK11 232 aa17.96■□□□□ 0.47
SS18-206ENST00000577572 SH2B2O14492 632 aaPredicted RBP17.96■□□□□ 0.47
SS18-206ENST00000577572 RANBP6O60518 1105 aaKnown RBP17.96■□□□□ 0.47
SS18-206ENST00000577572 MAP3K10Q02779 954 aa17.96■□□□□ 0.47
SS18-206ENST00000577572 TCP10Q12799 353 aa17.96■□□□□ 0.47
SS18-206ENST00000577572 TBC1D10BQ4KMP7 808 aaPredicted RBP17.96■□□□□ 0.47
SS18-206ENST00000577572 CYB5R4Q7L1T6 521 aa17.96■□□□□ 0.47
SS18-206ENST00000577572 SAMD7Q7Z3H4 446 aa17.96■□□□□ 0.47
SS18-206ENST00000577572 DGKHQ86XP1 1220 aa17.96■□□□□ 0.47
SS18-206ENST00000577572 ANKS1AQ92625 1134 aa17.96■□□□□ 0.47
SS18-206ENST00000577572 ZSCAN10Q96SZ4 725 aaPredicted RBP17.96■□□□□ 0.47
SS18-206ENST00000577572 VEZTQ9HBM0 779 aa17.96■□□□□ 0.47
SS18-206ENST00000577572 TACC3Q9Y6A5 838 aa17.96■□□□□ 0.47
SS18-206ENST00000577572 DDTLA6NHG4 134 aaPredicted RBP17.95■□□□□ 0.46
SS18-206ENST00000577572 TSPY2A6NKD2 308 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 TCP10L2B9ZVM9 353 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 IFIT3O14879 490 aaKnown RBP17.95■□□□□ 0.46
SS18-206ENST00000577572 RASA1P20936 1047 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 CACNB3P54284 484 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 PPP2R5BQ15173 497 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 TMEM67Q5HYA8 995 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 TATDN1Q6P1N9 297 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 SH3BP5LQ7L8J4 393 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 ZFPM1Q8IX07 1006 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 CRACR2BQ8N4Y2 399 aaPredicted RBP17.95■□□□□ 0.46
SS18-206ENST00000577572 NEDD1Q8NHV4 660 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 BRF1Q92994 677 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 CSRNP1Q96S65 589 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 TRIM34Q9BYJ4 488 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 HACL1Q9UJ83 578 aa17.95■□□□□ 0.46
SS18-206ENST00000577572 MYH1P12882 1939 aa17.94■□□□□ 0.46
SS18-206ENST00000577572 SHTN1A0MZ66 631 aa17.94■□□□□ 0.46
SS18-206ENST00000577572 EPS15P42566 896 aa17.94■□□□□ 0.46
SS18-206ENST00000577572 NOVP48745 357 aa17.94■□□□□ 0.46
SS18-206ENST00000577572 TFAP4Q01664 338 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms