RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 PALLDQ8WX93 1383 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 ATP10DQ9P241 1426 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 ZNF831Q5JPB2 1677 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 A6NJY4 79 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 TIMM44O43615 452 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 TATP17735 454 aaPredicted RBP8.4□□□□□ -1.06
VPS53-217ENST00000575100 IGFBP4P22692 258 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 MCL1Q07820 350 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 FUT2Q10981 343 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 OXLD1Q5BKU9 147 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 WDR63Q8IWG1 891 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 NGEFQ8N5V2 710 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 RAPGEF4Q8WZA2 1011 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 CCDC113Q9H0I3 377 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 ZHX3Q9H4I2 956 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 LGR6Q9HBX8 967 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 COPRSQ9NQ92 184 aa8.4□□□□□ -1.06
VPS53-217ENST00000575100 KIAA1551Q9HCM1 1747 aa8.4□□□□□ -1.07
VPS53-217ENST00000575100 SHTN1A0MZ66 631 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 CYP27B1O15528 508 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 LDHCP07864 332 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 CALRP27797 417 aaKnown RBP8.39□□□□□ -1.07
VPS53-217ENST00000575100 PMLP29590 882 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 ZNF530Q6P9A1 599 aaPredicted RBP8.39□□□□□ -1.07
VPS53-217ENST00000575100 CCDC174Q6PII3 467 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 MPRIPQ6WCQ1 1025 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 C14orf80Q86SX3 495 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 GJD3Q8N144 294 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 PDILTQ8N807 584 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 OTUD5Q96G74 571 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 PNMA3Q9UL41 463 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 SPG7Q9UQ90 795 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 LEMD3Q9Y2U8 911 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 CCDC163A0A0D9SF12 145 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 GNAT3A8MTJ3 354 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 ALG1L2C9J202 215 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 PLEKHO1Q53GL0 409 aaPredicted RBP8.39□□□□□ -1.07
VPS53-217ENST00000575100 IFNL3Q8IZI9 196 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 PAF1Q8N7H5 531 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 SMARCC1Q92922 1105 aaPredicted RBP8.39□□□□□ -1.07
VPS53-217ENST00000575100 NEUROD6Q96NK8 337 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 OCEL1Q9H607 264 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 MIS18AQ9NYP9 233 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 STRIP2Q9ULQ0 834 aa8.39□□□□□ -1.07
VPS53-217ENST00000575100 FANCIQ9NVI1 1328 aa8.38□□□□□ -1.07
VPS53-217ENST00000575100 AMOTQ4VCS5 1084 aa8.38□□□□□ -1.07
VPS53-217ENST00000575100 MEI1Q5TIA1 1274 aa8.38□□□□□ -1.07
VPS53-217ENST00000575100 C16orf46Q6P387 395 aa8.38□□□□□ -1.07
VPS53-217ENST00000575100 KDM6AO15550 1401 aaPredicted RBP8.38□□□□□ -1.07
VPS53-217ENST00000575100 CEMIPQ8WUJ3 1361 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 PLEKHG2Q9H7P9 1386 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 NPHP1O15259 732 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 ZNF853P0CG23 659 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 PHKG2P15735 406 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 ST13P50502 369 aaKnown RBP8.37□□□□□ -1.07
VPS53-217ENST00000575100 AKAP4Q5JQC9 854 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 ACBD5Q5T8D3 534 aaPredicted RBP8.37□□□□□ -1.07
VPS53-217ENST00000575100 MSL1Q68DK7 614 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 POTEGQ6S5H5 508 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 DDX42Q86XP3 938 aaKnown RBP eCLIP8.37□□□□□ -1.07
VPS53-217ENST00000575100 MYO1HQ8N1T3 1032 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 TTC8Q8TAM2 541 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 NKX2-3Q8TAU0 364 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 ENOX1Q8TC92 643 aaKnown RBP8.37□□□□□ -1.07
VPS53-217ENST00000575100 SECISBP2LQ93073 1101 aaKnown RBP8.37□□□□□ -1.07
VPS53-217ENST00000575100 PCDH10Q9P2E7 1040 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 ZNF69Q9UC07 566 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 COL5A3P25940 1745 aaPredicted RBP8.37□□□□□ -1.07
VPS53-217ENST00000575100 COL9A1P20849 921 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 PTK2Q05397 1052 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 SIM2Q14190 667 aaPredicted RBP8.37□□□□□ -1.07
VPS53-217ENST00000575100 KCTD2Q14681 263 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 TAF1CQ15572 869 aaPredicted RBP8.37□□□□□ -1.07
VPS53-217ENST00000575100 ZNF454Q8N9F8 522 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 MBIPQ9NS73 344 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 PRKAG3Q9UGI9 489 aa8.37□□□□□ -1.07
VPS53-217ENST00000575100 BRCA1P38398 1863 aaKnown RBP8.36□□□□□ -1.07
VPS53-217ENST00000575100 IL16Q14005 1332 aa8.36□□□□□ -1.07
VPS53-217ENST00000575100 KRT24Q2M2I5 525 aa8.36□□□□□ -1.07
VPS53-217ENST00000575100 IFFO2Q5TF58 517 aa8.36□□□□□ -1.07
VPS53-217ENST00000575100 IPO4Q8TEX9 1081 aaKnown RBP8.36□□□□□ -1.07
VPS53-217ENST00000575100 RTF1Q92541 710 aaKnown RBP8.36□□□□□ -1.07
VPS53-217ENST00000575100 E2F7Q96AV8 911 aa8.36□□□□□ -1.07
VPS53-217ENST00000575100 CSRNP1Q96S65 589 aa8.36□□□□□ -1.07
VPS53-217ENST00000575100 SPON2Q9BUD6 331 aa8.36□□□□□ -1.07
VPS53-217ENST00000575100 STIM2Q9P246 746 aa8.36□□□□□ -1.07
VPS53-217ENST00000575100 MAP10Q9P2G4 905 aa8.36□□□□□ -1.07
VPS53-217ENST00000575100 EFR3BQ9Y2G0 817 aa8.36□□□□□ -1.07
VPS53-217ENST00000575100 MRPS23Q9Y3D9 190 aaKnown RBP8.36□□□□□ -1.07
VPS53-217ENST00000575100 SUPT16HQ9Y5B9 1047 aaKnown RBP8.36□□□□□ -1.07
VPS53-217ENST00000575100 PCDHGA4Q9Y5G9 962 aa8.36□□□□□ -1.07
VPS53-217ENST00000575100 ADAMTS7Q9UKP4 1686 aa8.36□□□□□ -1.07
VPS53-217ENST00000575100 RNMTO43148 476 aaKnown RBP8.35□□□□□ -1.07
VPS53-217ENST00000575100 HTATSF1O43719 755 aaKnown RBP8.35□□□□□ -1.07
VPS53-217ENST00000575100 CNGA1P29973 690 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 SOX9P48436 509 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 EXOSC9Q06265 439 aaKnown RBP8.35□□□□□ -1.07
VPS53-217ENST00000575100 GRAMD1BQ3KR37 738 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 C1orf141Q5JVX7 400 aa8.35□□□□□ -1.07
VPS53-217ENST00000575100 AMIGO3Q86WK7 504 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms