RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 NR2E3Q9Y5X4 410 aa23.78■■□□□ 1.4
NUP88-203ENST00000572019 DDX60LQ5H9U9 1706 aaKnown RBP23.77■■□□□ 1.4
NUP88-203ENST00000572019 ERICH6Q7L0X2 663 aa23.77■■□□□ 1.4
NUP88-203ENST00000572019 LRCH3Q96II8 777 aa23.77■■□□□ 1.4
NUP88-203ENST00000572019 PAWRQ96IZ0 340 aaKnown RBP23.77■■□□□ 1.4
NUP88-203ENST00000572019 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.77■■□□□ 1.4
NUP88-203ENST00000572019 STAP2Q9UGK3 403 aa23.77■■□□□ 1.4
NUP88-203ENST00000572019 TBC1D12O60347 775 aa23.76■■□□□ 1.39
NUP88-203ENST00000572019 TNNQ9UQP3 1299 aa23.76■■□□□ 1.39
NUP88-203ENST00000572019 COL6A3P12111 3177 aa23.75■■□□□ 1.39
NUP88-203ENST00000572019 SRGAP3O43295 1099 aa23.75■■□□□ 1.39
NUP88-203ENST00000572019 EVI5O60447 810 aa23.75■■□□□ 1.39
NUP88-203ENST00000572019 HMGCS2P54868 508 aa23.75■■□□□ 1.39
NUP88-203ENST00000572019 JAG1P78504 1218 aa23.75■■□□□ 1.39
NUP88-203ENST00000572019 FAM110CQ1W6H9 321 aa23.75■■□□□ 1.39
NUP88-203ENST00000572019 SHROOM1Q2M3G4 852 aaPredicted RBP23.75■■□□□ 1.39
NUP88-203ENST00000572019 NSUN4Q96CB9 384 aaKnown RBP23.75■■□□□ 1.39
NUP88-203ENST00000572019 FOCADQ5VW36 1801 aa23.75■■□□□ 1.39
NUP88-203ENST00000572019 SPTY2D1Q68D10 685 aaPredicted RBP23.74■■□□□ 1.39
NUP88-203ENST00000572019 SLF2Q8IX21 1173 aa23.74■■□□□ 1.39
NUP88-203ENST00000572019 API5Q9BZZ5 524 aaKnown RBP23.74■■□□□ 1.39
NUP88-203ENST00000572019 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.74■■□□□ 1.39
NUP88-203ENST00000572019 OSBPL5Q9H0X9 879 aaPredicted RBP23.74■■□□□ 1.39
NUP88-203ENST00000572019 GJD2Q9UKL4 321 aa23.74■■□□□ 1.39
NUP88-203ENST00000572019 MNX1P50219 401 aaPredicted RBP23.73■■□□□ 1.39
NUP88-203ENST00000572019 MVPQ14764 893 aaKnown RBP23.73■■□□□ 1.39
NUP88-203ENST00000572019 PROCA1Q8NCQ7 364 aaPredicted RBP23.73■■□□□ 1.39
NUP88-203ENST00000572019 ZNF280CQ8ND82 737 aa23.73■■□□□ 1.39
NUP88-203ENST00000572019 COA7Q96BR5 231 aa23.73■■□□□ 1.39
NUP88-203ENST00000572019 NEUROD6Q96NK8 337 aa23.73■■□□□ 1.39
NUP88-203ENST00000572019 COL2A1P02458 1487 aaPredicted RBP23.73■■□□□ 1.39
NUP88-203ENST00000572019 NPM3O75607 178 aaKnown RBP23.72■■□□□ 1.39
NUP88-203ENST00000572019 SPATA5Q8NB90 893 aa23.72■■□□□ 1.39
NUP88-203ENST00000572019 ASCC2Q9H1I8 757 aaPredicted RBP23.72■■□□□ 1.39
NUP88-203ENST00000572019 MAST2Q6P0Q8 1798 aa23.72■■□□□ 1.39
NUP88-203ENST00000572019 CAP2P40123 477 aa23.71■■□□□ 1.39
NUP88-203ENST00000572019 MCAMP43121 646 aa23.71■■□□□ 1.39
NUP88-203ENST00000572019 MTX1Q13505 466 aa23.71■■□□□ 1.39
NUP88-203ENST00000572019 SH3RF3Q8TEJ3 882 aaPredicted RBP23.71■■□□□ 1.39
NUP88-203ENST00000572019 PNMA3Q9UL41 463 aa23.71■■□□□ 1.39
NUP88-203ENST00000572019 RARSP54136 660 aaKnown RBP23.7■■□□□ 1.38
NUP88-203ENST00000572019 RAI14Q9P0K7 980 aa23.7■■□□□ 1.38
NUP88-203ENST00000572019 AKAP2Q9Y2D5 859 aa23.7■■□□□ 1.38
NUP88-203ENST00000572019 PNMA6EA0A0J9YXQ4 647 aa23.69■■□□□ 1.38
NUP88-203ENST00000572019 ARID4AP29374 1257 aaPredicted RBP23.69■■□□□ 1.38
NUP88-203ENST00000572019 C7orf61Q8IZ16 206 aa23.69■■□□□ 1.38
NUP88-203ENST00000572019 TRIB2Q92519 343 aa23.69■■□□□ 1.38
NUP88-203ENST00000572019 DNAJC18Q9H819 358 aa23.69■■□□□ 1.38
NUP88-203ENST00000572019 ZMYND8Q9ULU4 1186 aaPredicted RBP23.69■■□□□ 1.38
NUP88-203ENST00000572019 HMGCRP04035 888 aa23.68■■□□□ 1.38
NUP88-203ENST00000572019 SH3D19Q5HYK7 790 aa23.68■■□□□ 1.38
NUP88-203ENST00000572019 ADGRA1Q86SQ6 560 aa23.68■■□□□ 1.38
NUP88-203ENST00000572019 TEX11Q8IYF3 940 aa23.68■■□□□ 1.38
NUP88-203ENST00000572019 TXNRD2Q9NNW7 524 aa23.68■■□□□ 1.38
NUP88-203ENST00000572019 USP17L5A8MUK1 530 aa23.67■■□□□ 1.38
NUP88-203ENST00000572019 GCLCP48506 637 aaPredicted RBP23.67■■□□□ 1.38
NUP88-203ENST00000572019 MTMR2Q13614 643 aa23.67■■□□□ 1.38
NUP88-203ENST00000572019 POTEEQ6S8J3 1075 aa23.67■■□□□ 1.38
NUP88-203ENST00000572019 NECAB2Q7Z6G3 386 aa23.67■■□□□ 1.38
NUP88-203ENST00000572019 SNRKQ9NRH2 765 aa23.67■■□□□ 1.38
NUP88-203ENST00000572019 CT47B1P0C2W7 299 aaPredicted RBP23.66■■□□□ 1.38
NUP88-203ENST00000572019 GDF15Q99988 308 aa23.66■■□□□ 1.38
NUP88-203ENST00000572019 AATFQ9NY61 560 aaKnown RBP eCLIP23.66■■□□□ 1.38
NUP88-203ENST00000572019 HDAC5Q9UQL6 1122 aa23.66■■□□□ 1.38
NUP88-203ENST00000572019 FRMPD3Q5JV73 1810 aa23.66■■□□□ 1.38
NUP88-203ENST00000572019 A0A1W2PPC1 479 aa23.65■■□□□ 1.38
NUP88-203ENST00000572019 LDHCP07864 332 aa23.65■■□□□ 1.38
NUP88-203ENST00000572019 GNAI3P08754 354 aa23.65■■□□□ 1.38
NUP88-203ENST00000572019 SYN1P17600 705 aa23.65■■□□□ 1.38
NUP88-203ENST00000572019 CYP2B6P20813 491 aa23.65■■□□□ 1.38
NUP88-203ENST00000572019 GSTO1P78417 241 aa23.65■■□□□ 1.38
NUP88-203ENST00000572019 P2RX7Q99572 595 aaKnown RBP23.65■■□□□ 1.38
NUP88-203ENST00000572019 MORF4L1Q9UBU8 362 aa23.65■■□□□ 1.38
NUP88-203ENST00000572019 RPTORQ8N122 1335 aa23.64■■□□□ 1.38
NUP88-203ENST00000572019 GORABQ5T7V8 394 aa23.64■■□□□ 1.37
NUP88-203ENST00000572019 HMX1Q9NP08 348 aaPredicted RBP23.64■■□□□ 1.37
NUP88-203ENST00000572019 MYH1P12882 1939 aa23.64■■□□□ 1.37
NUP88-203ENST00000572019 GDF11O95390 407 aa23.63■■□□□ 1.37
NUP88-203ENST00000572019 TRIM27P14373 513 aa23.63■■□□□ 1.37
NUP88-203ENST00000572019 MAPKAPK5Q8IW41 473 aa23.63■■□□□ 1.37
NUP88-203ENST00000572019 WDR18Q9BV38 432 aa23.63■■□□□ 1.37
NUP88-203ENST00000572019 LRP2BPQ9P2M1 347 aa23.63■■□□□ 1.37
NUP88-203ENST00000572019 HERC5Q9UII4 1024 aaKnown RBP23.63■■□□□ 1.37
NUP88-203ENST00000572019 PFASO15067 1338 aa23.62■■□□□ 1.37
NUP88-203ENST00000572019 MAP4K4O95819 1239 aaPredicted RBP23.62■■□□□ 1.37
NUP88-203ENST00000572019 BACE1P56817 501 aa23.62■■□□□ 1.37
NUP88-203ENST00000572019 Q3C1V9 767 aa23.62■■□□□ 1.37
NUP88-203ENST00000572019 MAP3K21Q5TCX8 1036 aa23.62■■□□□ 1.37
NUP88-203ENST00000572019 ANKLE1Q8NAG6 615 aa23.62■■□□□ 1.37
NUP88-203ENST00000572019 SLC17A8Q8NDX2 589 aa23.62■■□□□ 1.37
NUP88-203ENST00000572019 TGFBRAP1Q8WUH2 860 aa23.62■■□□□ 1.37
NUP88-203ENST00000572019 ARHGAP45Q92619 1136 aa23.62■■□□□ 1.37
NUP88-203ENST00000572019 PI4KBQ9UBF8 816 aa23.62■■□□□ 1.37
NUP88-203ENST00000572019 FLT1P17948 1338 aa23.61■■□□□ 1.37
NUP88-203ENST00000572019 PRKAR2AP13861 404 aaKnown RBP23.61■■□□□ 1.37
NUP88-203ENST00000572019 PABPC4Q13310 644 aaKnown RBP eCLIP23.61■■□□□ 1.37
NUP88-203ENST00000572019 Q7L0L9 218 aa23.61■■□□□ 1.37
NUP88-203ENST00000572019 DBNDD2Q9BQY9 259 aa23.61■■□□□ 1.37
NUP88-203ENST00000572019 TBC1D2Q9BYX2 928 aa23.61■■□□□ 1.37
NUP88-203ENST00000572019 NBPF3Q9H094 633 aa23.61■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms