RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SMC1BQ8NDV3 1235 aa11.14□□□□□ -0.63
VPS35-211ENST00000569950 NOL10Q9BSC4 688 aaKnown RBP11.14□□□□□ -0.63
VPS35-211ENST00000569950 DSCC1Q9BVC3 393 aa11.14□□□□□ -0.63
VPS35-211ENST00000569950 USP2O75604 605 aaPredicted RBP11.13□□□□□ -0.63
VPS35-211ENST00000569950 GNAT2P19087 354 aa11.13□□□□□ -0.63
VPS35-211ENST00000569950 FSTL1Q12841 308 aa11.13□□□□□ -0.63
VPS35-211ENST00000569950 MAP3K11Q16584 847 aa11.13□□□□□ -0.63
VPS35-211ENST00000569950 MOB2Q70IA6 237 aa11.13□□□□□ -0.63
VPS35-211ENST00000569950 MAP4K1Q92918 833 aa11.13□□□□□ -0.63
VPS35-211ENST00000569950 DYNLL2Q96FJ2 89 aa11.13□□□□□ -0.63
VPS35-211ENST00000569950 EHD4Q9H223 541 aa11.13□□□□□ -0.63
VPS35-211ENST00000569950 TMOD2Q9NZR1 351 aa11.13□□□□□ -0.63
VPS35-211ENST00000569950 ZNF112Q9UJU3 913 aa11.13□□□□□ -0.63
VPS35-211ENST00000569950 PCNTO95613 3336 aa11.13□□□□□ -0.63
VPS35-211ENST00000569950 TBC1D12O60347 775 aa11.12□□□□□ -0.63
VPS35-211ENST00000569950 FGRP09769 529 aa11.12□□□□□ -0.63
VPS35-211ENST00000569950 SHMT1P34896 483 aa11.12□□□□□ -0.63
VPS35-211ENST00000569950 USP5P45974 858 aa11.12□□□□□ -0.63
VPS35-211ENST00000569950 TNNI2P48788 182 aa11.12□□□□□ -0.63
VPS35-211ENST00000569950 TBC1D10CQ8IV04 446 aa11.12□□□□□ -0.63
VPS35-211ENST00000569950 SLC44A5Q8NCS7 719 aa11.12□□□□□ -0.63
VPS35-211ENST00000569950 CSRNP1Q96S65 589 aa11.12□□□□□ -0.63
VPS35-211ENST00000569950 INCENPQ9NQS7 918 aa11.12□□□□□ -0.63
VPS35-211ENST00000569950 MCM9Q9NXL9 1143 aa11.12□□□□□ -0.63
VPS35-211ENST00000569950 ANAPC4Q9UJX5 808 aa11.12□□□□□ -0.63
VPS35-211ENST00000569950 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.12□□□□□ -0.63
VPS35-211ENST00000569950 NECTIN1Q15223 517 aa11.11□□□□□ -0.63
VPS35-211ENST00000569950 LDLRAD1Q5T700 205 aa11.11□□□□□ -0.63
VPS35-211ENST00000569950 TATDN1Q6P1N9 297 aa11.11□□□□□ -0.63
VPS35-211ENST00000569950 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.11□□□□□ -0.63
VPS35-211ENST00000569950 C16orf86Q6ZW13 317 aa11.11□□□□□ -0.63
VPS35-211ENST00000569950 MIGA2Q7L4E1 593 aa11.11□□□□□ -0.63
VPS35-211ENST00000569950 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.11□□□□□ -0.63
VPS35-211ENST00000569950 RUFY2Q8WXA3 655 aa11.11□□□□□ -0.63
VPS35-211ENST00000569950 KLRG1Q96E93 195 aa11.11□□□□□ -0.63
VPS35-211ENST00000569950 DHX36Q9H2U1 1008 aaKnown RBP11.11□□□□□ -0.63
VPS35-211ENST00000569950 CYP21A2P08686 494 aa11.1□□□□□ -0.63
VPS35-211ENST00000569950 INPP5BP32019 993 aa11.1□□□□□ -0.63
VPS35-211ENST00000569950 CTDSPL2Q05D32 466 aa11.1□□□□□ -0.63
VPS35-211ENST00000569950 PPARAQ07869 468 aa11.1□□□□□ -0.63
VPS35-211ENST00000569950 STOX1Q6ZVD7 989 aa11.1□□□□□ -0.63
VPS35-211ENST00000569950 KCNB2Q92953 911 aa11.1□□□□□ -0.63
VPS35-211ENST00000569950 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.1□□□□□ -0.63
VPS35-211ENST00000569950 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.1□□□□□ -0.63
VPS35-211ENST00000569950 PI4KBQ9UBF8 816 aa11.1□□□□□ -0.63
VPS35-211ENST00000569950 ARPP21Q9UBL0 812 aaPredicted RBP11.1□□□□□ -0.63
VPS35-211ENST00000569950 SERPINB13Q9UIV8 391 aa11.1□□□□□ -0.63
VPS35-211ENST00000569950 RBM8AQ9Y5S9 174 aaKnown RBP11.1□□□□□ -0.63
VPS35-211ENST00000569950 THSD7BQ9C0I4 1608 aa11.09□□□□□ -0.63
VPS35-211ENST00000569950 CELF2O95319 508 aaKnown RBP11.09□□□□□ -0.63
VPS35-211ENST00000569950 RASA1P20936 1047 aa11.09□□□□□ -0.63
VPS35-211ENST00000569950 GUCY1A2P33402 732 aa11.09□□□□□ -0.63
VPS35-211ENST00000569950 CDK8P49336 464 aa11.09□□□□□ -0.63
VPS35-211ENST00000569950 FOXP4Q8IVH2 680 aaPredicted RBP11.09□□□□□ -0.63
VPS35-211ENST00000569950 RASEFQ8IZ41 740 aa11.09□□□□□ -0.63
VPS35-211ENST00000569950 CLMNQ96JQ2 1002 aa11.09□□□□□ -0.63
VPS35-211ENST00000569950 USP26Q9BXU7 913 aa11.09□□□□□ -0.63
VPS35-211ENST00000569950 NAPBQ9H115 298 aa11.09□□□□□ -0.63
VPS35-211ENST00000569950 GBA2Q9HCG7 927 aaPredicted RBP11.09□□□□□ -0.63
VPS35-211ENST00000569950 HERC5Q9UII4 1024 aaKnown RBP11.09□□□□□ -0.63
VPS35-211ENST00000569950 SNCAIPQ9Y6H5 919 aa11.09□□□□□ -0.63
VPS35-211ENST00000569950 MYH4Q9Y623 1939 aa11.09□□□□□ -0.63
VPS35-211ENST00000569950 NEDD4P46934 1319 aa11.09□□□□□ -0.63
VPS35-211ENST00000569950 APPP05067 770 aa11.08□□□□□ -0.64
VPS35-211ENST00000569950 TDO2P48775 406 aa11.08□□□□□ -0.64
VPS35-211ENST00000569950 MFAP1P55081 439 aaKnown RBP11.08□□□□□ -0.64
VPS35-211ENST00000569950 HAND2P61296 217 aa11.08□□□□□ -0.64
VPS35-211ENST00000569950 SUPT20HL1Q3ZLR7 823 aa11.08□□□□□ -0.64
VPS35-211ENST00000569950 TTC6Q86TZ1 520 aa11.08□□□□□ -0.64
VPS35-211ENST00000569950 SAPCD2Q86UD0 394 aa11.08□□□□□ -0.64
VPS35-211ENST00000569950 ZSCAN29Q8IWY8 852 aaPredicted RBP11.08□□□□□ -0.64
VPS35-211ENST00000569950 LOC285556D6RIA3 1793 aa11.08□□□□□ -0.64
VPS35-211ENST00000569950 PLIN4Q96Q06 1357 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 IGKV6D-41A0A0C4DH26 115 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 MINDY4BA8MYZ0 360 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 UBE2Q2LH0YL09 131 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 SLC27A2O14975 620 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 ORC4O43929 436 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 POLR3DP05423 398 aaPredicted RBP11.07□□□□□ -0.64
VPS35-211ENST00000569950 GJA5P36382 358 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 APLP1P51693 650 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 FKBP1BP68106 108 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 PRKG1Q13976 671 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 VGLL4Q14135 290 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 NOL9Q5SY16 702 aaKnown RBP11.07□□□□□ -0.64
VPS35-211ENST00000569950 CREB3L3Q68CJ9 461 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 CCDC84Q86UT8 332 aaPredicted RBP11.07□□□□□ -0.64
VPS35-211ENST00000569950 SIAH1Q8IUQ4 282 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 STAG1Q8WVM7 1258 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 ZKSCAN4Q969J2 545 aaPredicted RBP11.07□□□□□ -0.64
VPS35-211ENST00000569950 IL17RAQ96F46 866 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 ZNF341Q9BYN7 854 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 NACAP1Q9BZK3 213 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 ZNF408Q9H9D4 720 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 ANO2Q9NQ90 1003 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 TLL2Q9Y6L7 1015 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 U3KPZ7 1027 aaPredicted RBP11.07□□□□□ -0.64
VPS35-211ENST00000569950 PARP14Q460N5 1801 aa11.07□□□□□ -0.64
VPS35-211ENST00000569950 RLFQ13129 1914 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 FAM155AB1AL88 458 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms