RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 KLC4Q9NSK0 619 aa12.3□□□□□ -0.44
CLK3-226ENST00000569406 LRRFIP1Q32MZ4 808 aaKnown RBP12.29□□□□□ -0.44
CLK3-226ENST00000569406 BRINP3Q76B58 766 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 AFAP1L1Q8TED9 768 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 PHACTR1Q9C0D0 580 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 SNX14Q9Y5W7 946 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 COL15A1P39059 1388 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 PTH1RQ03431 593 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 EPAS1Q99814 870 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 NUP62CLQ9H1M0 184 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 DNAJC25Q9H1X3 360 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 SNRKQ9NRH2 765 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 RTEL1Q9NZ71 1219 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 TTC41PQ6P2S7 1318 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 RPAP1Q9BWH6 1393 aaPredicted RBP12.29□□□□□ -0.44
CLK3-226ENST00000569406 HSPA2P54652 639 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 MMADHCQ9H3L0 296 aaPredicted RBP12.29□□□□□ -0.44
CLK3-226ENST00000569406 NLRP2Q9NX02 1062 aa12.29□□□□□ -0.44
CLK3-226ENST00000569406 COL5A2P05997 1499 aaPredicted RBP12.29□□□□□ -0.44
CLK3-226ENST00000569406 SHTN1A0MZ66 631 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 PPP2R3AQ06190 1150 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 ST3GAL1Q11201 340 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 GCKRQ14397 625 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 SLC30A9Q6PML9 568 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 TMC6Q7Z403 805 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 ZEB2O60315 1214 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 ATP6V1G1O75348 118 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 MYBL1P10243 752 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 ETF1P62495 437 aaKnown RBP12.28□□□□□ -0.44
CLK3-226ENST00000569406 MYBPC2Q14324 1141 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 WLSQ5T9L3 541 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 E4F1Q66K89 784 aaPredicted RBP12.28□□□□□ -0.44
CLK3-226ENST00000569406 BCAS4Q8TDM0 211 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 XAGE3Q8WTP9 111 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 SMARCC1Q92922 1105 aaPredicted RBP12.28□□□□□ -0.44
CLK3-226ENST00000569406 TPCN1Q9ULQ1 816 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 JCADQ9P266 1359 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 NBPF26B4DH59 902 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 AIMP1Q12904 312 aaKnown RBP12.28□□□□□ -0.44
CLK3-226ENST00000569406 NBPF14Q5TI25 921 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 COPS6Q7L5N1 327 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 NBPF15Q8N660 670 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 KCNV2Q8TDN2 545 aa12.28□□□□□ -0.44
CLK3-226ENST00000569406 MAP2K7O14733 419 aa12.27□□□□□ -0.44
CLK3-226ENST00000569406 CA8P35219 290 aa12.27□□□□□ -0.44
CLK3-226ENST00000569406 LRRC23Q53EV4 343 aaPredicted RBP12.27□□□□□ -0.44
CLK3-226ENST00000569406 RBM12BQ8IXT5 1001 aaKnown RBP12.27□□□□□ -0.44
CLK3-226ENST00000569406 TNMDQ9H2S6 317 aa12.27□□□□□ -0.44
CLK3-226ENST00000569406 PDHBP11177 359 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 ATF3P18847 181 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 CDC25CP30307 473 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 GNPTABQ3T906 1256 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 CDCA2Q69YH5 1023 aaPredicted RBP12.27□□□□□ -0.45
CLK3-226ENST00000569406 FAM71BQ8TC56 605 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 METTL22Q9BUU2 404 aaPredicted RBP12.27□□□□□ -0.45
CLK3-226ENST00000569406 RGL1Q9NZL6 768 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 TAF6LQ9Y6J9 622 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 CCDC151A5D8V7 595 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 MYL6BP14649 208 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 ADCK5Q3MIX3 580 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 ACBD5Q5T8D3 534 aaPredicted RBP12.27□□□□□ -0.45
CLK3-226ENST00000569406 RNF187Q5TA31 235 aaPredicted RBP12.27□□□□□ -0.45
CLK3-226ENST00000569406 IFNL2Q8IZJ0 200 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 FAM81AQ8TBF8 368 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 DCAF5Q96JK2 942 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 MMTAG2Q9BU76 263 aaKnown RBP12.27□□□□□ -0.45
CLK3-226ENST00000569406 SPG7Q9UQ90 795 aa12.27□□□□□ -0.45
CLK3-226ENST00000569406 TNS2Q63HR2 1409 aa12.26□□□□□ -0.45
CLK3-226ENST00000569406 RABL6Q3YEC7 729 aaPredicted RBP12.26□□□□□ -0.45
CLK3-226ENST00000569406 RUFY3Q7L099 469 aa12.26□□□□□ -0.45
CLK3-226ENST00000569406 FBXW7Q969H0 707 aa12.26□□□□□ -0.45
CLK3-226ENST00000569406 SOS2Q07890 1332 aaPredicted RBP12.26□□□□□ -0.45
CLK3-226ENST00000569406 LARGE1O95461 756 aa12.26□□□□□ -0.45
CLK3-226ENST00000569406 RASA3Q14644 834 aa12.26□□□□□ -0.45
CLK3-226ENST00000569406 VPS53Q5VIR6 699 aa12.26□□□□□ -0.45
CLK3-226ENST00000569406 RAPGEF4Q8WZA2 1011 aa12.26□□□□□ -0.45
CLK3-226ENST00000569406 ARPC5LQ9BPX5 153 aa12.26□□□□□ -0.45
CLK3-226ENST00000569406 NAT10Q9H0A0 1025 aaKnown RBP12.26□□□□□ -0.45
CLK3-226ENST00000569406 C9orf78Q9NZ63 289 aaPredicted RBP12.26□□□□□ -0.45
CLK3-226ENST00000569406 RNF40O75150 1001 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 CHGBP05060 677 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 CPA1P15085 419 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 MAP3K9P80192 1104 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 BICD2Q8TD16 824 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 INTS4Q96HW7 963 aaKnown RBP12.25□□□□□ -0.45
CLK3-226ENST00000569406 NHSL1Q5SYE7 1610 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 BECN2A8MW95 431 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 ZNF189O75820 626 aaPredicted RBP12.25□□□□□ -0.45
CLK3-226ENST00000569406 CEBPZQ03701 1054 aaKnown RBP12.25□□□□□ -0.45
CLK3-226ENST00000569406 PTPN12Q05209 780 aaKnown RBP12.25□□□□□ -0.45
CLK3-226ENST00000569406 TMEM62Q0P6H9 643 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 NECTIN1Q15223 517 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 SNCBQ16143 134 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 RCSD1Q6JBY9 416 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 TAX1BP1Q86VP1 789 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 ECHDC1Q9NTX5 307 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 SPDYE3A6NKU9 549 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 TATP17735 454 aaPredicted RBP12.25□□□□□ -0.45
CLK3-226ENST00000569406 ARHGAP22Q7Z5H3 698 aa12.25□□□□□ -0.45
CLK3-226ENST00000569406 ERLIN1O75477 346 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms