RNA–Protein interactions for RNA: ENST00000569117.1

CDH3-210, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 576 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-210ENST00000569117 EPHX2P34913 555 aa12.47□□□□□ -0.41
CDH3-210ENST00000569117 PTH1RQ03431 593 aa12.47□□□□□ -0.41
CDH3-210ENST00000569117 NBPF9Q3BBW0 867 aa12.47□□□□□ -0.41
CDH3-210ENST00000569117 MAP4K1Q92918 833 aa12.47□□□□□ -0.41
CDH3-210ENST00000569117 MS4A3Q96HJ5 214 aa12.47□□□□□ -0.41
CDH3-210ENST00000569117 NACAP1Q9BZK3 213 aa12.47□□□□□ -0.41
CDH3-210ENST00000569117 TMOD2Q9NZR1 351 aa12.47□□□□□ -0.41
CDH3-210ENST00000569117 ZNF70Q9UC06 446 aaPredicted RBP12.47□□□□□ -0.41
CDH3-210ENST00000569117 MKRN1Q9UHC7 482 aaKnown RBP12.47□□□□□ -0.41
CDH3-210ENST00000569117 MYH8P13535 1937 aa12.47□□□□□ -0.41
CDH3-210ENST00000569117 ATRNL1Q5VV63 1379 aa12.46□□□□□ -0.41
CDH3-210ENST00000569117 PITPNM2Q9BZ72 1349 aa12.46□□□□□ -0.41
CDH3-210ENST00000569117 PATL2C9JE40 543 aaKnown RBP12.46□□□□□ -0.41
CDH3-210ENST00000569117 USP5P45974 858 aa12.46□□□□□ -0.41
CDH3-210ENST00000569117 NFIAQ12857 509 aa12.46□□□□□ -0.41
CDH3-210ENST00000569117 ALX1Q15699 326 aa12.46□□□□□ -0.41
CDH3-210ENST00000569117 USP50Q70EL3 339 aaPredicted RBP12.46□□□□□ -0.41
CDH3-210ENST00000569117 IFNL3Q8IZI9 196 aa12.46□□□□□ -0.41
CDH3-210ENST00000569117 TGFBRAP1Q8WUH2 860 aa12.46□□□□□ -0.41
CDH3-210ENST00000569117 ARID3AQ99856 593 aa12.46□□□□□ -0.41
CDH3-210ENST00000569117 TAF1DQ9H5J8 278 aaPredicted RBP12.46□□□□□ -0.41
CDH3-210ENST00000569117 DCP1AQ9NPI6 582 aaPredicted RBP12.46□□□□□ -0.41
CDH3-210ENST00000569117 ARPP21Q9UBL0 812 aaPredicted RBP12.46□□□□□ -0.41
CDH3-210ENST00000569117 CNTNAP1P78357 1384 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 ROBO3Q96MS0 1386 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 CLRN2A0PK11 232 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 IRF6O14896 467 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 ENTPD3O75355 529 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 TDO2P48775 406 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 HIRAP54198 1017 aaPredicted RBP12.45□□□□□ -0.42
CDH3-210ENST00000569117 CACNB3P54284 484 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 FOXK1P85037 733 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 MAP2K5Q13163 448 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 TNFAIP1Q13829 316 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 PNMA8AQ86V59 439 aaPredicted RBP12.45□□□□□ -0.42
CDH3-210ENST00000569117 APOBEC3FQ8IUX4 373 aaKnown RBP12.45□□□□□ -0.42
CDH3-210ENST00000569117 MAPKAPK5Q8IW41 473 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 TMC2Q8TDI7 906 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 CCDC102AQ96A19 550 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 OSBPL5Q9H0X9 879 aaPredicted RBP12.45□□□□□ -0.42
CDH3-210ENST00000569117 NAPBQ9H115 298 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 DDX4Q9NQI0 724 aaKnown RBP12.45□□□□□ -0.42
CDH3-210ENST00000569117 GGA3Q9NZ52 723 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 FAM198AQ9UFP1 575 aa12.45□□□□□ -0.42
CDH3-210ENST00000569117 RBM8AQ9Y5S9 174 aaKnown RBP12.45□□□□□ -0.42
CDH3-210ENST00000569117 ASTN2O75129 1339 aaPredicted RBP12.44□□□□□ -0.42
CDH3-210ENST00000569117 POLR2AP24928 1970 aaKnown RBP12.44□□□□□ -0.42
CDH3-210ENST00000569117 GRXCR2A6NFK2 248 aa12.44□□□□□ -0.42
CDH3-210ENST00000569117 FGAP02671 866 aa12.44□□□□□ -0.42
CDH3-210ENST00000569117 APPP05067 770 aa12.44□□□□□ -0.42
CDH3-210ENST00000569117 PICALMQ13492 652 aa12.44□□□□□ -0.42
CDH3-210ENST00000569117 SBK1Q52WX2 424 aa12.44□□□□□ -0.42
CDH3-210ENST00000569117 FAM83AQ86UY5 434 aa12.44□□□□□ -0.42
CDH3-210ENST00000569117 USP26Q9BXU7 913 aa12.44□□□□□ -0.42
CDH3-210ENST00000569117 UPF2Q9HAU5 1272 aaKnown RBP12.44□□□□□ -0.42
CDH3-210ENST00000569117 VEZTQ9HBM0 779 aa12.44□□□□□ -0.42
CDH3-210ENST00000569117 CTNNA3Q9UI47 895 aa12.44□□□□□ -0.42
CDH3-210ENST00000569117 VEGFAP15692 232 aaPredicted RBP12.43□□□□□ -0.42
CDH3-210ENST00000569117 HSPA4P34932 840 aa12.43□□□□□ -0.42
CDH3-210ENST00000569117 TNNI2P48788 182 aa12.43□□□□□ -0.42
CDH3-210ENST00000569117 NECTIN1Q15223 517 aa12.43□□□□□ -0.42
CDH3-210ENST00000569117 AMHR2Q16671 573 aa12.43□□□□□ -0.42
CDH3-210ENST00000569117 ANGEL2Q5VTE6 544 aaKnown RBP12.43□□□□□ -0.42
CDH3-210ENST00000569117 FAM151AQ8WW52 585 aa12.43□□□□□ -0.42
CDH3-210ENST00000569117 MCM9Q9NXL9 1143 aa12.43□□□□□ -0.42
CDH3-210ENST00000569117 TCP10L2B9ZVM9 353 aa12.42□□□□□ -0.42
CDH3-210ENST00000569117 MCCP23508 829 aa12.42□□□□□ -0.42
CDH3-210ENST00000569117 CTR9Q6PD62 1173 aa12.42□□□□□ -0.42
CDH3-210ENST00000569117 CHRDL2Q6WN34 429 aa12.42□□□□□ -0.42
CDH3-210ENST00000569117 AMOTL1Q8IY63 956 aa12.42□□□□□ -0.42
CDH3-210ENST00000569117 DHX36Q9H2U1 1008 aaKnown RBP12.42□□□□□ -0.42
CDH3-210ENST00000569117 NMRK2Q9NPI5 230 aa12.42□□□□□ -0.42
CDH3-210ENST00000569117 PGAP2Q9UHJ9 254 aa12.42□□□□□ -0.42
CDH3-210ENST00000569117 ANAPC4Q9UJX5 808 aa12.42□□□□□ -0.42
CDH3-210ENST00000569117 PPP2R3BQ9Y5P8 575 aa12.42□□□□□ -0.42
CDH3-210ENST00000569117 PAPPA2Q9BXP8 1791 aa12.42□□□□□ -0.42
CDH3-210ENST00000569117 TTLL13PA6NNM8 815 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 USP17L12C9JPN9 530 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 USP17L21D6R901 530 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 SLC27A2O14975 620 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 CYP21A2P08686 494 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 TIE1P35590 1138 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 RBM25P49756 843 aaKnown RBP12.41□□□□□ -0.42
CDH3-210ENST00000569117 PPARAQ07869 468 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 TCP10Q12799 353 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 IMMTQ16891 758 aaKnown RBP12.41□□□□□ -0.42
CDH3-210ENST00000569117 C12orf60Q5U649 245 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 RNF20Q5VTR2 975 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 CREB3L3Q68CJ9 461 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 SH3BP5LQ7L8J4 393 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 PARP9Q8IXQ6 854 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 KCNB2Q92953 911 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 EHD4Q9H223 541 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 RRAGCQ9HB90 399 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 SAP30BPQ9UHR5 308 aaKnown RBP12.41□□□□□ -0.42
CDH3-210ENST00000569117 PALD1Q9ULE6 856 aa12.41□□□□□ -0.42
CDH3-210ENST00000569117 GREB1LQ9C091 1923 aaPredicted RBP12.41□□□□□ -0.42
CDH3-210ENST00000569117 SSC5DA1L4H1 1573 aa12.4□□□□□ -0.42
CDH3-210ENST00000569117 OTOFQ9HC10 1997 aa12.4□□□□□ -0.42
CDH3-210ENST00000569117 ATAD5Q96QE3 1844 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms