RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 SLAIN1Q8ND83 568 aa19.14■□□□□ 0.65
NME3-211ENST00000568561 DPF3Q92784 378 aa19.14■□□□□ 0.65
NME3-211ENST00000568561 OSBPL5Q9H0X9 879 aaPredicted RBP19.14■□□□□ 0.65
NME3-211ENST00000568561 SNRKQ9NRH2 765 aa19.14■□□□□ 0.65
NME3-211ENST00000568561 TAOK2Q9UL54 1235 aa19.14■□□□□ 0.65
NME3-211ENST00000568561 AGTPBP1Q9UPW5 1226 aa19.14■□□□□ 0.65
NME3-211ENST00000568561 SLC45A1Q9Y2W3 748 aa19.14■□□□□ 0.65
NME3-211ENST00000568561 GSTO1P78417 241 aa19.13■□□□□ 0.65
NME3-211ENST00000568561 G3BP1Q13283 466 aaKnown RBP eCLIP19.13■□□□□ 0.65
NME3-211ENST00000568561 CHRDL2Q6WN34 429 aa19.13■□□□□ 0.65
NME3-211ENST00000568561 TEX11Q8IYF3 940 aa19.13■□□□□ 0.65
NME3-211ENST00000568561 NKX2-3Q8TAU0 364 aa19.13■□□□□ 0.65
NME3-211ENST00000568561 SH3RF3Q8TEJ3 882 aaPredicted RBP19.13■□□□□ 0.65
NME3-211ENST00000568561 COL2A1P02458 1487 aaPredicted RBP19.13■□□□□ 0.65
NME3-211ENST00000568561 CCER2I3L3R5 266 aa19.12■□□□□ 0.65
NME3-211ENST00000568561 INHAP05111 366 aa19.12■□□□□ 0.65
NME3-211ENST00000568561 LDHCP07864 332 aa19.12■□□□□ 0.65
NME3-211ENST00000568561 SPP2Q13103 211 aa19.12■□□□□ 0.65
NME3-211ENST00000568561 UBE2Q1Q7Z7E8 422 aa19.12■□□□□ 0.65
NME3-211ENST00000568561 U2AF1L4Q8WU68 220 aaKnown RBP19.12■□□□□ 0.65
NME3-211ENST00000568561 LRP2BPQ9P2M1 347 aa19.12■□□□□ 0.65
NME3-211ENST00000568561 SZT2Q5T011 3432 aa19.12■□□□□ 0.65
NME3-211ENST00000568561 IPO8O15397 1037 aaKnown RBP19.11■□□□□ 0.65
NME3-211ENST00000568561 TBC1D12O60347 775 aa19.11■□□□□ 0.65
NME3-211ENST00000568561 NPM3O75607 178 aaKnown RBP19.11■□□□□ 0.65
NME3-211ENST00000568561 FARP2O94887 1054 aaPredicted RBP19.11■□□□□ 0.65
NME3-211ENST00000568561 HMGCS2P54868 508 aa19.11■□□□□ 0.65
NME3-211ENST00000568561 TMEM57Q8N5G2 664 aa19.11■□□□□ 0.65
NME3-211ENST00000568561 ALPK3Q96L96 1907 aa19.11■□□□□ 0.65
NME3-211ENST00000568561 DBNDD2Q9BQY9 259 aa19.1■□□□□ 0.65
NME3-211ENST00000568561 C1orf115Q9H7X2 142 aa19.1■□□□□ 0.65
NME3-211ENST00000568561 AATFQ9NY61 560 aaKnown RBP eCLIP19.1■□□□□ 0.65
NME3-211ENST00000568561 PLXNB2O15031 1838 aa19.09■□□□□ 0.65
NME3-211ENST00000568561 UQCRFS1P1P0C7P4 283 aa19.09■□□□□ 0.65
NME3-211ENST00000568561 TTC39AQ5SRH9 613 aa19.09■□□□□ 0.65
NME3-211ENST00000568561 ADGRA1Q86SQ6 560 aa19.09■□□□□ 0.65
NME3-211ENST00000568561 PROCA1Q8NCQ7 364 aaPredicted RBP19.09■□□□□ 0.65
NME3-211ENST00000568561 ZNF280CQ8ND82 737 aa19.09■□□□□ 0.65
NME3-211ENST00000568561 PNMA3Q9UL41 463 aa19.09■□□□□ 0.65
NME3-211ENST00000568561 SGPL1O95470 568 aa19.08■□□□□ 0.64
NME3-211ENST00000568561 CAP2P40123 477 aa19.08■□□□□ 0.64
NME3-211ENST00000568561 OS9Q13438 667 aaPredicted RBP19.08■□□□□ 0.64
NME3-211ENST00000568561 FAM110CQ1W6H9 321 aa19.08■□□□□ 0.64
NME3-211ENST00000568561 SHROOM1Q2M3G4 852 aaPredicted RBP19.08■□□□□ 0.64
NME3-211ENST00000568561 NAA16Q6N069 864 aaPredicted RBP19.08■□□□□ 0.64
NME3-211ENST00000568561 MAPKAPK5Q8IW41 473 aa19.08■□□□□ 0.64
NME3-211ENST00000568561 DEFB118Q96PH6 123 aa19.08■□□□□ 0.64
NME3-211ENST00000568561 NOL10Q9BSC4 688 aaKnown RBP19.08■□□□□ 0.64
NME3-211ENST00000568561 MAP4K4O95819 1239 aaPredicted RBP19.07■□□□□ 0.64
NME3-211ENST00000568561 JAG1P78504 1218 aa19.07■□□□□ 0.64
NME3-211ENST00000568561 IRF5Q13568 498 aa19.07■□□□□ 0.64
NME3-211ENST00000568561 TNNI3KQ59H18 835 aa19.07■□□□□ 0.64
NME3-211ENST00000568561 PXYLP1Q8TE99 480 aa19.07■□□□□ 0.64
NME3-211ENST00000568561 COA7Q96BR5 231 aa19.07■□□□□ 0.64
NME3-211ENST00000568561 HTATIP2Q9BUP3 242 aa19.07■□□□□ 0.64
NME3-211ENST00000568561 RBM27Q9P2N5 1060 aaKnown RBP19.07■□□□□ 0.64
NME3-211ENST00000568561 FPGT-TNNI3KV9GXZ4 949 aa19.07■□□□□ 0.64
NME3-211ENST00000568561 MYH1P12882 1939 aa19.06■□□□□ 0.64
NME3-211ENST00000568561 USP17L5A8MUK1 530 aa19.06■□□□□ 0.64
NME3-211ENST00000568561 PEX10O60683 326 aa19.06■□□□□ 0.64
NME3-211ENST00000568561 MTMR2Q13614 643 aa19.06■□□□□ 0.64
NME3-211ENST00000568561 POLA2Q14181 598 aa19.06■□□□□ 0.64
NME3-211ENST00000568561 ZKSCAN2Q63HK3 967 aa19.06■□□□□ 0.64
NME3-211ENST00000568561 TGFBRAP1Q8WUH2 860 aa19.06■□□□□ 0.64
NME3-211ENST00000568561 ASCC2Q9H1I8 757 aaPredicted RBP19.06■□□□□ 0.64
NME3-211ENST00000568561 DNAJC18Q9H819 358 aa19.06■□□□□ 0.64
NME3-211ENST00000568561 FLT1P17948 1338 aa19.05■□□□□ 0.64
NME3-211ENST00000568561 GDF11O95390 407 aa19.05■□□□□ 0.64
NME3-211ENST00000568561 TFRCP02786 760 aaKnown RBP19.05■□□□□ 0.64
NME3-211ENST00000568561 CYP2E1P05181 493 aaPredicted RBP19.05■□□□□ 0.64
NME3-211ENST00000568561 PIH1D3Q9NQM4 214 aaKnown RBP19.05■□□□□ 0.64
NME3-211ENST00000568561 TLR7Q9NYK1 1049 aaKnown RBP19.05■□□□□ 0.64
NME3-211ENST00000568561 SAP30BPQ9UHR5 308 aaKnown RBP19.05■□□□□ 0.64
NME3-211ENST00000568561 HERC5Q9UII4 1024 aaKnown RBP19.05■□□□□ 0.64
NME3-211ENST00000568561 SURF6O75683 361 aaKnown RBP19.04■□□□□ 0.64
NME3-211ENST00000568561 ZAP70P43403 619 aa19.04■□□□□ 0.64
NME3-211ENST00000568561 CCDC158Q5M9N0 1113 aa19.04■□□□□ 0.64
NME3-211ENST00000568561 SSH3Q8TE77 659 aa19.04■□□□□ 0.64
NME3-211ENST00000568561 AS3MTQ9HBK9 375 aa19.04■□□□□ 0.64
NME3-211ENST00000568561 GPR108Q9NPR9 543 aa19.04■□□□□ 0.64
NME3-211ENST00000568561 PAK6Q9NQU5 681 aaPredicted RBP19.04■□□□□ 0.64
NME3-211ENST00000568561 PI4KBQ9UBF8 816 aa19.04■□□□□ 0.64
NME3-211ENST00000568561 PALD1Q9ULE6 856 aa19.04■□□□□ 0.64
NME3-211ENST00000568561 ZBTB7BO15156 539 aaPredicted RBP19.03■□□□□ 0.64
NME3-211ENST00000568561 BAG3O95817 575 aa19.03■□□□□ 0.64
NME3-211ENST00000568561 GCLCP48506 637 aaPredicted RBP19.03■□□□□ 0.64
NME3-211ENST00000568561 DYNLL1P63167 89 aaKnown RBP19.03■□□□□ 0.64
NME3-211ENST00000568561 TRIM32Q13049 653 aa19.03■□□□□ 0.64
NME3-211ENST00000568561 PABPC4Q13310 644 aaKnown RBP eCLIP19.03■□□□□ 0.643e-7■■■■□ 23
NME3-211ENST00000568561 SH3D19Q5HYK7 790 aa19.03■□□□□ 0.64
NME3-211ENST00000568561 DIS3LQ8TF46 1054 aaKnown RBP19.03■□□□□ 0.64
NME3-211ENST00000568561 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.03■□□□□ 0.641e-12■■□□□ 11.8
NME3-211ENST00000568561 DBNLQ9UJU6 430 aaKnown RBP19.03■□□□□ 0.64
NME3-211ENST00000568561 DDX60LQ5H9U9 1706 aaKnown RBP19.03■□□□□ 0.64
NME3-211ENST00000568561 ATP8B2P98198 1209 aa19.02■□□□□ 0.64
NME3-211ENST00000568561 CRACR2BQ8N4Y2 399 aaPredicted RBP19.02■□□□□ 0.64
NME3-211ENST00000568561 TRIM34Q9BYJ4 488 aa19.02■□□□□ 0.64
NME3-211ENST00000568561 TBC1D2Q9BYX2 928 aa19.02■□□□□ 0.64
NME3-211ENST00000568561 DHX36Q9H2U1 1008 aaKnown RBP19.02■□□□□ 0.64
NME3-211ENST00000568561 NR2E3Q9Y5X4 410 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms