RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 CDK5RAP2Q96SN8 1893 aa20.68■□□□□ 0.9
CLN3-231ENST00000568422 SURF6O75683 361 aaKnown RBP20.67■□□□□ 0.9
CLN3-231ENST00000568422 ECM2O94769 699 aaPredicted RBP20.67■□□□□ 0.9
CLN3-231ENST00000568422 MYCP01106 439 aaPredicted RBP20.67■□□□□ 0.9
CLN3-231ENST00000568422 NAA16Q6N069 864 aaPredicted RBP20.67■□□□□ 0.9
CLN3-231ENST00000568422 NKX2-3Q8TAU0 364 aa20.67■□□□□ 0.9
CLN3-231ENST00000568422 SMCR8Q8TEV9 937 aaPredicted RBP20.67■□□□□ 0.9
CLN3-231ENST00000568422 PI4KBQ9UBF8 816 aa20.67■□□□□ 0.9
CLN3-231ENST00000568422 PNMA3Q9UL41 463 aa20.67■□□□□ 0.9
CLN3-231ENST00000568422 NOP58Q9Y2X3 529 aaKnown RBP20.67■□□□□ 0.9
CLN3-231ENST00000568422 LOC285556D6RIA3 1793 aa20.67■□□□□ 0.9
CLN3-231ENST00000568422 SLURP2P0DP57 97 aa20.66■□□□□ 0.9
CLN3-231ENST00000568422 CAP2P40123 477 aa20.66■□□□□ 0.9
CLN3-231ENST00000568422 PPP4CP60510 307 aa20.66■□□□□ 0.9
CLN3-231ENST00000568422 SLAIN1Q8ND83 568 aa20.66■□□□□ 0.9
CLN3-231ENST00000568422 DBNDD2Q9BQY9 259 aa20.66■□□□□ 0.9
CLN3-231ENST00000568422 MYO5AQ9Y4I1 1855 aaKnown RBP20.65■□□□□ 0.9
CLN3-231ENST00000568422 ZBTB7BO15156 539 aaPredicted RBP20.65■□□□□ 0.9
CLN3-231ENST00000568422 UBXN2AP68543 259 aa20.65■□□□□ 0.9
CLN3-231ENST00000568422 PRKCZQ05513 592 aa20.65■□□□□ 0.9
CLN3-231ENST00000568422 ITPRIPQ8IWB1 547 aa20.65■□□□□ 0.9
CLN3-231ENST00000568422 ZNF280CQ8ND82 737 aa20.65■□□□□ 0.9
CLN3-231ENST00000568422 SH3RF3Q8TEJ3 882 aaPredicted RBP20.65■□□□□ 0.9
CLN3-231ENST00000568422 SNRKQ9NRH2 765 aa20.65■□□□□ 0.9
CLN3-231ENST00000568422 FAM196BA6NMK8 535 aa20.64■□□□□ 0.89
CLN3-231ENST00000568422 PABPC4Q13310 644 aaKnown RBP eCLIP20.64■□□□□ 0.89
CLN3-231ENST00000568422 AATFQ9NY61 560 aaKnown RBP eCLIP20.64■□□□□ 0.89
CLN3-231ENST00000568422 BIN2Q9UBW5 565 aaPredicted RBP20.64■□□□□ 0.89
CLN3-231ENST00000568422 USP17L5A8MUK1 530 aa20.63■□□□□ 0.89
CLN3-231ENST00000568422 CYP2E1P05181 493 aaPredicted RBP20.63■□□□□ 0.89
CLN3-231ENST00000568422 GJB1P08034 283 aa20.63■□□□□ 0.89
CLN3-231ENST00000568422 SPP2Q13103 211 aa20.63■□□□□ 0.89
CLN3-231ENST00000568422 MTFR1Q15390 333 aa20.63■□□□□ 0.89
CLN3-231ENST00000568422 AS3MTQ9HBK9 375 aa20.63■□□□□ 0.89
CLN3-231ENST00000568422 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.63■□□□□ 0.89
CLN3-231ENST00000568422 SIPA1L1O43166 1804 aa20.62■□□□□ 0.89
CLN3-231ENST00000568422 CCL5P13501 91 aa20.62■□□□□ 0.89
CLN3-231ENST00000568422 CAPN2P17655 700 aa20.62■□□□□ 0.89
CLN3-231ENST00000568422 GJA8P48165 433 aa20.62■□□□□ 0.89
CLN3-231ENST00000568422 GCLCP48506 637 aaPredicted RBP20.62■□□□□ 0.89
CLN3-231ENST00000568422 IRF5Q13568 498 aa20.62■□□□□ 0.89
CLN3-231ENST00000568422 HABP4Q5JVS0 413 aaKnown RBP20.62■□□□□ 0.89
CLN3-231ENST00000568422 FOXP4Q8IVH2 680 aaPredicted RBP20.62■□□□□ 0.89
CLN3-231ENST00000568422 PXYLP1Q8TE99 480 aa20.62■□□□□ 0.89
CLN3-231ENST00000568422 C1orf115Q9H7X2 142 aa20.62■□□□□ 0.89
CLN3-231ENST00000568422 TNPO2O14787 897 aaKnown RBP20.61■□□□□ 0.89
CLN3-231ENST00000568422 ASNSP08243 561 aa20.61■□□□□ 0.89
CLN3-231ENST00000568422 FAM110CQ1W6H9 321 aa20.61■□□□□ 0.89
CLN3-231ENST00000568422 SH3D19Q5HYK7 790 aa20.61■□□□□ 0.89
CLN3-231ENST00000568422 TREML2Q5T2D2 321 aa20.61■□□□□ 0.89
CLN3-231ENST00000568422 TMED8Q6PL24 325 aaPredicted RBP20.61■□□□□ 0.89
CLN3-231ENST00000568422 CCDC84Q86UT8 332 aaPredicted RBP20.61■□□□□ 0.89
CLN3-231ENST00000568422 METTL16Q86W50 562 aaKnown RBP20.61■□□□□ 0.89
CLN3-231ENST00000568422 CERS3Q8IU89 383 aa20.61■□□□□ 0.89
CLN3-231ENST00000568422 RNF208Q9H0X6 261 aa20.61■□□□□ 0.89
CLN3-231ENST00000568422 GINM1Q9NU53 330 aa20.61■□□□□ 0.89
CLN3-231ENST00000568422 DBNLQ9UJU6 430 aaKnown RBP20.61■□□□□ 0.89
CLN3-231ENST00000568422 GABRQQ9UN88 632 aa20.61■□□□□ 0.89
CLN3-231ENST00000568422 ADCY3O60266 1144 aa20.6■□□□□ 0.89
CLN3-231ENST00000568422 RLBP1P12271 317 aa20.6■□□□□ 0.89
CLN3-231ENST00000568422 ZAP70P43403 619 aa20.6■□□□□ 0.89
CLN3-231ENST00000568422 FLT3LGP49771 235 aa20.6■□□□□ 0.89
CLN3-231ENST00000568422 HMGCS2P54868 508 aa20.6■□□□□ 0.89
CLN3-231ENST00000568422 MIER1Q8N108 512 aa20.6■□□□□ 0.89
CLN3-231ENST00000568422 ANKRD13CQ8N6S4 541 aa20.6■□□□□ 0.89
CLN3-231ENST00000568422 TGFBRAP1Q8WUH2 860 aa20.6■□□□□ 0.89
CLN3-231ENST00000568422 COA7Q96BR5 231 aa20.6■□□□□ 0.89
CLN3-231ENST00000568422 WDR18Q9BV38 432 aa20.6■□□□□ 0.89
CLN3-231ENST00000568422 DOCK3Q8IZD9 2030 aa20.6■□□□□ 0.89
CLN3-231ENST00000568422 FLT1P17948 1338 aa20.59■□□□□ 0.89
CLN3-231ENST00000568422 RRP1BQ14684 758 aaKnown RBP20.59■□□□□ 0.89
CLN3-231ENST00000568422 ADGRA1Q86SQ6 560 aa20.59■□□□□ 0.89
CLN3-231ENST00000568422 ERC1Q8IUD2 1116 aa20.59■□□□□ 0.89
CLN3-231ENST00000568422 MAPKAPK5Q8IW41 473 aa20.59■□□□□ 0.89
CLN3-231ENST00000568422 SHISA4Q96DD7 197 aa20.59■□□□□ 0.89
CLN3-231ENST00000568422 TRIM34Q9BYJ4 488 aa20.59■□□□□ 0.89
CLN3-231ENST00000568422 MYH1P12882 1939 aa20.59■□□□□ 0.89
CLN3-231ENST00000568422 CRACR2BQ8N4Y2 399 aaPredicted RBP20.58■□□□□ 0.89
CLN3-231ENST00000568422 EAF2Q96CJ1 260 aaPredicted RBP20.58■□□□□ 0.89
CLN3-231ENST00000568422 PIH1D3Q9NQM4 214 aaKnown RBP20.58■□□□□ 0.89
CLN3-231ENST00000568422 ZBED9Q6R2W3 1325 aa20.57■□□□□ 0.88
CLN3-231ENST00000568422 C19orf81C9J6K1 198 aa20.57■□□□□ 0.88
CLN3-231ENST00000568422 HLA-DOAP06340 250 aa20.57■□□□□ 0.88
CLN3-231ENST00000568422 DIEXFQ68CQ4 756 aaKnown RBP20.57■□□□□ 0.88
CLN3-231ENST00000568422 CEP85Q6P2H3 762 aa20.57■□□□□ 0.88
CLN3-231ENST00000568422 CCDC8Q9H0W5 538 aaPredicted RBP20.57■□□□□ 0.88
CLN3-231ENST00000568422 MS4A1P11836 297 aa20.56■□□□□ 0.88
CLN3-231ENST00000568422 CYP7A1P22680 504 aa20.56■□□□□ 0.88
CLN3-231ENST00000568422 BACE1P56817 501 aa20.56■□□□□ 0.88
CLN3-231ENST00000568422 HSP90AB4PQ58FF6 505 aa20.56■□□□□ 0.88
CLN3-231ENST00000568422 UBE2Q1Q7Z7E8 422 aa20.56■□□□□ 0.88
CLN3-231ENST00000568422 U2AF1L4Q8WU68 220 aaKnown RBP20.56■□□□□ 0.88
CLN3-231ENST00000568422 HTATIP2Q9BUP3 242 aa20.56■□□□□ 0.88
CLN3-231ENST00000568422 ASCC2Q9H1I8 757 aaPredicted RBP20.56■□□□□ 0.88
CLN3-231ENST00000568422 TLR7Q9NYK1 1049 aaKnown RBP20.56■□□□□ 0.88
CLN3-231ENST00000568422 TMOD4Q9NZQ9 345 aa20.56■□□□□ 0.88
CLN3-231ENST00000568422 PALD1Q9ULE6 856 aa20.56■□□□□ 0.88
CLN3-231ENST00000568422 IDH1O75874 414 aaKnown RBP20.55■□□□□ 0.88
CLN3-231ENST00000568422 SGPL1O95470 568 aa20.55■□□□□ 0.88
CLN3-231ENST00000568422 INHAP05111 366 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms