RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ZNF532Q9HCE3 1301 aa18.23■□□□□ 0.51
VPS39-210ENST00000568357 MYO5AQ9Y4I1 1855 aaKnown RBP18.23■□□□□ 0.51
VPS39-210ENST00000568357 CTNND1O60716 968 aaKnown RBP18.23■□□□□ 0.51
VPS39-210ENST00000568357 CHGBP05060 677 aa18.23■□□□□ 0.51
VPS39-210ENST00000568357 RRP1BQ14684 758 aaKnown RBP18.23■□□□□ 0.51
VPS39-210ENST00000568357 SCYL3Q8IZE3 742 aa18.23■□□□□ 0.51
VPS39-210ENST00000568357 FAM43AQ8N2R8 423 aa18.23■□□□□ 0.51
VPS39-210ENST00000568357 OTUD7AQ8TE49 926 aaPredicted RBP18.23■□□□□ 0.51
VPS39-210ENST00000568357 DHX36Q9H2U1 1008 aaKnown RBP18.23■□□□□ 0.51
VPS39-210ENST00000568357 PI4KBQ9UBF8 816 aa18.23■□□□□ 0.51
VPS39-210ENST00000568357 SAP30BPQ9UHR5 308 aaKnown RBP18.23■□□□□ 0.51
VPS39-210ENST00000568357 COL2A1P02458 1487 aaPredicted RBP18.22■□□□□ 0.51
VPS39-210ENST00000568357 CETPP11597 493 aa18.22■□□□□ 0.51
VPS39-210ENST00000568357 PTPRAP18433 802 aa18.22■□□□□ 0.51
VPS39-210ENST00000568357 SNAPC2Q13487 334 aa18.22■□□□□ 0.51
VPS39-210ENST00000568357 HDAC1Q13547 482 aaPredicted RBP18.22■□□□□ 0.51
VPS39-210ENST00000568357 NOM1Q5C9Z4 860 aaKnown RBP18.22■□□□□ 0.51
VPS39-210ENST00000568357 OTUD7BQ6GQQ9 843 aa18.22■□□□□ 0.51
VPS39-210ENST00000568357 KCNH4Q9UQ05 1017 aa18.22■□□□□ 0.51
VPS39-210ENST00000568357 ZHX2Q9Y6X8 837 aa18.22■□□□□ 0.51
VPS39-210ENST00000568357 MAST2Q6P0Q8 1798 aa18.22■□□□□ 0.51
VPS39-210ENST00000568357 MAGEB6P1A0A0J9YX57 407 aa18.21■□□□□ 0.51
VPS39-210ENST00000568357 FKTNO75072 461 aa18.21■□□□□ 0.51
VPS39-210ENST00000568357 USP5P45974 858 aa18.21■□□□□ 0.51
VPS39-210ENST00000568357 CRHR2Q13324 411 aa18.21■□□□□ 0.51
VPS39-210ENST00000568357 AAMPQ13685 434 aa18.21■□□□□ 0.51
VPS39-210ENST00000568357 METTL16Q86W50 562 aaKnown RBP18.21■□□□□ 0.51
VPS39-210ENST00000568357 CERS3Q8IU89 383 aa18.21■□□□□ 0.51
VPS39-210ENST00000568357 FOXP4Q8IVH2 680 aaPredicted RBP18.21■□□□□ 0.51
VPS39-210ENST00000568357 PICK1Q9NRD5 415 aa18.21■□□□□ 0.51
VPS39-210ENST00000568357 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.21■□□□□ 0.51
VPS39-210ENST00000568357 BRCA2P51587 3418 aa18.21■□□□□ 0.51
VPS39-210ENST00000568357 BTBD19C9JJ37 291 aa18.2■□□□□ 0.5
VPS39-210ENST00000568357 ADD2P35612 726 aa18.2■□□□□ 0.5
VPS39-210ENST00000568357 MOGSQ13724 837 aa18.2■□□□□ 0.5
VPS39-210ENST00000568357 SLC4A8Q2Y0W8 1093 aa18.2■□□□□ 0.5
VPS39-210ENST00000568357 ANKRD45Q5TZF3 282 aa18.2■□□□□ 0.5
VPS39-210ENST00000568357 DNAJC18Q9H819 358 aa18.2■□□□□ 0.5
VPS39-210ENST00000568357 HERC5Q9UII4 1024 aaKnown RBP18.2■□□□□ 0.5
VPS39-210ENST00000568357 AK9Q5TCS8 1911 aa18.19■□□□□ 0.5
VPS39-210ENST00000568357 CCDC84Q86UT8 332 aaPredicted RBP18.19■□□□□ 0.5
VPS39-210ENST00000568357 LCORLQ8N3X6 602 aa18.19■□□□□ 0.5
VPS39-210ENST00000568357 GPATCH3Q96I76 525 aa18.19■□□□□ 0.5
VPS39-210ENST00000568357 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.19■□□□□ 0.5
VPS39-210ENST00000568357 AFG3L2Q9Y4W6 797 aa18.19■□□□□ 0.5
VPS39-210ENST00000568357 CXCL11O14625 94 aa18.18■□□□□ 0.5
VPS39-210ENST00000568357 CAP2P40123 477 aa18.18■□□□□ 0.5
VPS39-210ENST00000568357 JAG1P78504 1218 aa18.18■□□□□ 0.5
VPS39-210ENST00000568357 UBE3CQ15386 1083 aa18.18■□□□□ 0.5
VPS39-210ENST00000568357 ARMT1Q9H993 441 aa18.18■□□□□ 0.5
VPS39-210ENST00000568357 DOCK2Q92608 1830 aa18.18■□□□□ 0.5
VPS39-210ENST00000568357 CENPFP49454 3210 aa18.18■□□□□ 0.5
VPS39-210ENST00000568357 LAMB1P07942 1786 aa18.17■□□□□ 0.5
VPS39-210ENST00000568357 IGHDP01880 384 aa18.17■□□□□ 0.5
VPS39-210ENST00000568357 CRACR2BQ8N4Y2 399 aaPredicted RBP18.17■□□□□ 0.5
VPS39-210ENST00000568357 PI4K2BQ8TCG2 481 aa18.17■□□□□ 0.5
VPS39-210ENST00000568357 CRNKL1Q9BZJ0 848 aaKnown RBP18.17■□□□□ 0.5
VPS39-210ENST00000568357 COLQQ9Y215 455 aaPredicted RBP18.17■□□□□ 0.5
VPS39-210ENST00000568357 TRIM17Q9Y577 477 aa18.17■□□□□ 0.5
VPS39-210ENST00000568357 TTC41PQ6P2S7 1318 aa18.17■□□□□ 0.5
VPS39-210ENST00000568357 PRKAB2O43741 272 aa18.16■□□□□ 0.5
VPS39-210ENST00000568357 HLA-DOAP06340 250 aa18.16■□□□□ 0.5
VPS39-210ENST00000568357 TAF1CQ15572 869 aaPredicted RBP18.16■□□□□ 0.5
VPS39-210ENST00000568357 GPAT2Q6NUI2 795 aa18.16■□□□□ 0.5
VPS39-210ENST00000568357 KBTBD3Q8NAB2 608 aa18.16■□□□□ 0.5
VPS39-210ENST00000568357 SDR42E1Q8WUS8 393 aa18.16■□□□□ 0.5
VPS39-210ENST00000568357 RWDD1Q9H446 243 aaPredicted RBP18.16■□□□□ 0.5
VPS39-210ENST00000568357 ZFYVE28Q9HCC9 887 aa18.16■□□□□ 0.5
VPS39-210ENST00000568357 SALL3Q9BXA9 1300 aa18.16■□□□□ 0.5
VPS39-210ENST00000568357 A0A0G2JLL6 359 aaPredicted RBP18.15■□□□□ 0.5
VPS39-210ENST00000568357 TRIM75PA6NK02 468 aa18.15■□□□□ 0.5
VPS39-210ENST00000568357 MBD4O95243 580 aa18.15■□□□□ 0.5
VPS39-210ENST00000568357 MX1P20591 662 aa18.15■□□□□ 0.5
VPS39-210ENST00000568357 PLCD1P51178 756 aa18.15■□□□□ 0.5
VPS39-210ENST00000568357 EVX2Q03828 476 aa18.15■□□□□ 0.5
VPS39-210ENST00000568357 SHROOM1Q2M3G4 852 aaPredicted RBP18.15■□□□□ 0.5
VPS39-210ENST00000568357 ZSCAN25Q6NSZ9 544 aa18.15■□□□□ 0.5
VPS39-210ENST00000568357 OTOP1Q7RTM1 612 aa18.15■□□□□ 0.5
VPS39-210ENST00000568357 PRRT2Q7Z6L0 340 aaPredicted RBP18.15■□□□□ 0.5
VPS39-210ENST00000568357 ANKRD23Q86SG2 305 aa18.15■□□□□ 0.5
VPS39-210ENST00000568357 PUS7LQ9H0K6 701 aaKnown RBP18.15■□□□□ 0.5
VPS39-210ENST00000568357 ZCCHC17Q9NP64 241 aaKnown RBP18.15■□□□□ 0.5
VPS39-210ENST00000568357 DCP1AQ9NPI6 582 aaPredicted RBP18.15■□□□□ 0.5
VPS39-210ENST00000568357 SZT2Q5T011 3432 aa18.15■□□□□ 0.5
VPS39-210ENST00000568357 PDHXO00330 501 aa18.14■□□□□ 0.49
VPS39-210ENST00000568357 EN2P19622 333 aaPredicted RBP18.14■□□□□ 0.49
VPS39-210ENST00000568357 IRX6P78412 446 aaPredicted RBP18.14■□□□□ 0.49
VPS39-210ENST00000568357 SPP2Q13103 211 aa18.14■□□□□ 0.49
VPS39-210ENST00000568357 TTC6Q86TZ1 520 aa18.14■□□□□ 0.49
VPS39-210ENST00000568357 SMC5Q8IY18 1101 aa18.14■□□□□ 0.49
VPS39-210ENST00000568357 TRIM34Q9BYJ4 488 aa18.14■□□□□ 0.49
VPS39-210ENST00000568357 SERPINB13Q9UIV8 391 aa18.14■□□□□ 0.49
VPS39-210ENST00000568357 ERC2O15083 957 aa18.13■□□□□ 0.49
VPS39-210ENST00000568357 GLRX3O76003 335 aaKnown RBP18.13■□□□□ 0.49
VPS39-210ENST00000568357 POLR3DP05423 398 aaPredicted RBP18.13■□□□□ 0.49
VPS39-210ENST00000568357 CAP1Q01518 475 aa18.13■□□□□ 0.49
VPS39-210ENST00000568357 SP3Q02447 781 aa18.13■□□□□ 0.49
VPS39-210ENST00000568357 B4GALNT3Q6L9W6 998 aa18.13■□□□□ 0.49
VPS39-210ENST00000568357 TATDN1Q6P1N9 297 aa18.13■□□□□ 0.49
VPS39-210ENST00000568357 EHD4Q9H223 541 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms