RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 AATFQ9NY61 560 aaKnown RBP eCLIP19.72■□□□□ 0.75
CLN3-229ENST00000567963 BAG3O95817 575 aa19.71■□□□□ 0.75
CLN3-229ENST00000567963 CCDC84Q86UT8 332 aaPredicted RBP19.71■□□□□ 0.75
CLN3-229ENST00000567963 DBNLQ9UJU6 430 aaKnown RBP19.71■□□□□ 0.75
CLN3-229ENST00000567963 IGSF3O75054 1194 aa19.7■□□□□ 0.74
CLN3-229ENST00000567963 MYCP01106 439 aaPredicted RBP19.7■□□□□ 0.74
CLN3-229ENST00000567963 ZAP70P43403 619 aa19.7■□□□□ 0.74
CLN3-229ENST00000567963 PPP4CP60510 307 aa19.7■□□□□ 0.74
CLN3-229ENST00000567963 EAF2Q96CJ1 260 aaPredicted RBP19.7■□□□□ 0.74
CLN3-229ENST00000567963 CCDC8Q9H0W5 538 aaPredicted RBP19.7■□□□□ 0.74
CLN3-229ENST00000567963 MYO5AQ9Y4I1 1855 aaKnown RBP19.7■□□□□ 0.74
CLN3-229ENST00000567963 PLCG2P16885 1265 aa19.69■□□□□ 0.74
CLN3-229ENST00000567963 CEP85Q6P2H3 762 aa19.69■□□□□ 0.74
CLN3-229ENST00000567963 ADGRA1Q86SQ6 560 aa19.69■□□□□ 0.74
CLN3-229ENST00000567963 DHX36Q9H2U1 1008 aaKnown RBP19.69■□□□□ 0.74
CLN3-229ENST00000567963 TLR7Q9NYK1 1049 aaKnown RBP19.69■□□□□ 0.74
CLN3-229ENST00000567963 PI4KBQ9UBF8 816 aa19.69■□□□□ 0.74
CLN3-229ENST00000567963 HERC5Q9UII4 1024 aaKnown RBP19.69■□□□□ 0.74
CLN3-229ENST00000567963 MAST2Q6P0Q8 1798 aa19.68■□□□□ 0.74
CLN3-229ENST00000567963 CAP2P40123 477 aa19.68■□□□□ 0.74
CLN3-229ENST00000567963 FCGRTP55899 365 aa19.68■□□□□ 0.74
CLN3-229ENST00000567963 RRP1BQ14684 758 aaKnown RBP19.68■□□□□ 0.74
CLN3-229ENST00000567963 RAET1EQ8TD07 263 aa19.68■□□□□ 0.74
CLN3-229ENST00000567963 PANK1Q8TE04 598 aa19.68■□□□□ 0.74
CLN3-229ENST00000567963 AGTPBP1Q9UPW5 1226 aa19.68■□□□□ 0.74
CLN3-229ENST00000567963 MYPNQ86TC9 1320 aa19.68■□□□□ 0.74
CLN3-229ENST00000567963 MGAMO43451 1857 aa19.68■□□□□ 0.74
CLN3-229ENST00000567963 GRK4P32298 578 aa19.67■□□□□ 0.74
CLN3-229ENST00000567963 SPP2Q13103 211 aa19.67■□□□□ 0.74
CLN3-229ENST00000567963 ZNF280CQ8ND82 737 aa19.67■□□□□ 0.74
CLN3-229ENST00000567963 TGFBRAP1Q8WUH2 860 aa19.67■□□□□ 0.74
CLN3-229ENST00000567963 TBC1D2Q9BYX2 928 aa19.67■□□□□ 0.74
CLN3-229ENST00000567963 PIH1D3Q9NQM4 214 aaKnown RBP19.67■□□□□ 0.74
CLN3-229ENST00000567963 ATAD5Q96QE3 1844 aa19.67■□□□□ 0.74
CLN3-229ENST00000567963 TREML2Q5T2D2 321 aa19.67■□□□□ 0.74
CLN3-229ENST00000567963 PROCA1Q8NCQ7 364 aaPredicted RBP19.67■□□□□ 0.74
CLN3-229ENST00000567963 SMCR8Q8TEV9 937 aaPredicted RBP19.67■□□□□ 0.74
CLN3-229ENST00000567963 CDK5RAP2Q96SN8 1893 aa19.66■□□□□ 0.74
CLN3-229ENST00000567963 USP17L5A8MUK1 530 aa19.66■□□□□ 0.74
CLN3-229ENST00000567963 PRKCZQ05513 592 aa19.66■□□□□ 0.74
CLN3-229ENST00000567963 MTFR1Q15390 333 aa19.66■□□□□ 0.74
CLN3-229ENST00000567963 MAPKAPK5Q8IW41 473 aa19.66■□□□□ 0.74
CLN3-229ENST00000567963 EXOC6BQ9Y2D4 811 aa19.66■□□□□ 0.74
CLN3-229ENST00000567963 FLT1P17948 1338 aa19.66■□□□□ 0.74
CLN3-229ENST00000567963 SIPA1L1O43166 1804 aa19.65■□□□□ 0.74
CLN3-229ENST00000567963 FOCADQ5VW36 1801 aa19.65■□□□□ 0.74
CLN3-229ENST00000567963 METTL16Q86W50 562 aaKnown RBP19.65■□□□□ 0.74
CLN3-229ENST00000567963 FOXP4Q8IVH2 680 aaPredicted RBP19.65■□□□□ 0.74
CLN3-229ENST00000567963 GABRQQ9UN88 632 aa19.65■□□□□ 0.74
CLN3-229ENST00000567963 ERC1Q8IUD2 1116 aa19.64■□□□□ 0.73
CLN3-229ENST00000567963 PNMA3Q9UL41 463 aa19.64■□□□□ 0.73
CLN3-229ENST00000567963 PALD1Q9ULE6 856 aa19.64■□□□□ 0.73
CLN3-229ENST00000567963 IDH1O75874 414 aaKnown RBP19.63■□□□□ 0.73
CLN3-229ENST00000567963 MS4A1P11836 297 aa19.63■□□□□ 0.73
CLN3-229ENST00000567963 CYP7A1P22680 504 aa19.63■□□□□ 0.73
CLN3-229ENST00000567963 HMGCS2P54868 508 aa19.63■□□□□ 0.73
CLN3-229ENST00000567963 DYNLL1P63167 89 aaKnown RBP19.63■□□□□ 0.73
CLN3-229ENST00000567963 SH3D19Q5HYK7 790 aa19.63■□□□□ 0.73
CLN3-229ENST00000567963 ANKRD13CQ8N6S4 541 aa19.63■□□□□ 0.73
CLN3-229ENST00000567963 DNAJC18Q9H819 358 aa19.63■□□□□ 0.73
CLN3-229ENST00000567963 AS3MTQ9HBK9 375 aa19.63■□□□□ 0.73
CLN3-229ENST00000567963 NDUFB9Q9Y6M9 179 aa19.63■□□□□ 0.73
CLN3-229ENST00000567963 ASNSP08243 561 aa19.62■□□□□ 0.73
CLN3-229ENST00000567963 AACSQ86V21 672 aa19.62■□□□□ 0.73
CLN3-229ENST00000567963 GCC1Q96CN9 775 aa19.62■□□□□ 0.73
CLN3-229ENST00000567963 LOC285556D6RIA3 1793 aa19.62■□□□□ 0.73
CLN3-229ENST00000567963 TNPO2O14787 897 aaKnown RBP19.61■□□□□ 0.73
CLN3-229ENST00000567963 FLT3LGP49771 235 aa19.61■□□□□ 0.73
CLN3-229ENST00000567963 JAG1P78504 1218 aa19.61■□□□□ 0.73
CLN3-229ENST00000567963 PABPC4Q13310 644 aaKnown RBP eCLIP19.61■□□□□ 0.733e-6■■■■□ 26.6
CLN3-229ENST00000567963 FAM110CQ1W6H9 321 aa19.61■□□□□ 0.73
CLN3-229ENST00000567963 HSP90AB4PQ58FF6 505 aa19.61■□□□□ 0.73
CLN3-229ENST00000567963 CRACR2BQ8N4Y2 399 aaPredicted RBP19.61■□□□□ 0.73
CLN3-229ENST00000567963 SLAIN1Q8ND83 568 aa19.61■□□□□ 0.73
CLN3-229ENST00000567963 WDR18Q9BV38 432 aa19.61■□□□□ 0.73
CLN3-229ENST00000567963 ANTXR1Q9H6X2 564 aa19.61■□□□□ 0.73
CLN3-229ENST00000567963 BIN2Q9UBW5 565 aaPredicted RBP19.61■□□□□ 0.73
CLN3-229ENST00000567963 CCL5P13501 91 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 UBXN2AP68543 259 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 CERS3Q8IU89 383 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 MAGEB6Q8N7X4 407 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 MIGA1Q8NAN2 632 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 NKX2-3Q8TAU0 364 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 RHPN1Q8TCX5 695 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 TRIM34Q9BYJ4 488 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 SAP30BPQ9UHR5 308 aaKnown RBP19.6■□□□□ 0.73
CLN3-229ENST00000567963 ADCY3O60266 1144 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 HLA-DOAP06340 250 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 GCLCP48506 637 aaPredicted RBP19.6■□□□□ 0.73
CLN3-229ENST00000567963 BACE1P56817 501 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 MAP3K12Q12852 859 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 TMED8Q6PL24 325 aaPredicted RBP19.6■□□□□ 0.73
CLN3-229ENST00000567963 RPAP2Q8IXW5 612 aaPredicted RBP19.6■□□□□ 0.73
CLN3-229ENST00000567963 SHISA4Q96DD7 197 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 RNF208Q9H0X6 261 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 ASCC2Q9H1I8 757 aaPredicted RBP19.6■□□□□ 0.73
CLN3-229ENST00000567963 IL1RAPL2Q9NP60 686 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 GINM1Q9NU53 330 aa19.6■□□□□ 0.73
CLN3-229ENST00000567963 DOCK3Q8IZD9 2030 aa19.59■□□□□ 0.73
CLN3-229ENST00000567963 GJB1P08034 283 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms