RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 AGTPBP1Q9UPW5 1226 aa18.36■□□□□ 0.53
CLN3-228ENST00000567804 MYH1P12882 1939 aa18.35■□□□□ 0.53
CLN3-228ENST00000567804 TNNI3KQ59H18 835 aa18.35■□□□□ 0.53
CLN3-228ENST00000567804 SLAIN1Q8ND83 568 aa18.35■□□□□ 0.53
CLN3-228ENST00000567804 SSH3Q8TE77 659 aa18.35■□□□□ 0.53
CLN3-228ENST00000567804 SH3RF3Q8TEJ3 882 aaPredicted RBP18.35■□□□□ 0.53
CLN3-228ENST00000567804 SMCR8Q8TEV9 937 aaPredicted RBP18.35■□□□□ 0.53
CLN3-228ENST00000567804 FPGT-TNNI3KV9GXZ4 949 aa18.35■□□□□ 0.53
CLN3-228ENST00000567804 GJB1P08034 283 aa18.34■□□□□ 0.53
CLN3-228ENST00000567804 CCL5P13501 91 aa18.34■□□□□ 0.53
CLN3-228ENST00000567804 UBXN2AP68543 259 aa18.34■□□□□ 0.53
CLN3-228ENST00000567804 ATP8B2P98198 1209 aa18.34■□□□□ 0.53
CLN3-228ENST00000567804 TTC39AQ5SRH9 613 aa18.34■□□□□ 0.53
CLN3-228ENST00000567804 TREML2Q5T2D2 321 aa18.34■□□□□ 0.53
CLN3-228ENST00000567804 PROCA1Q8NCQ7 364 aaPredicted RBP18.34■□□□□ 0.53
CLN3-228ENST00000567804 NKX2-3Q8TAU0 364 aa18.34■□□□□ 0.53
CLN3-228ENST00000567804 DBNDD2Q9BQY9 259 aa18.34■□□□□ 0.53
CLN3-228ENST00000567804 SNRKQ9NRH2 765 aa18.34■□□□□ 0.53
CLN3-228ENST00000567804 CAP2P40123 477 aa18.33■□□□□ 0.52
CLN3-228ENST00000567804 GJA8P48165 433 aa18.33■□□□□ 0.52
CLN3-228ENST00000567804 SPP2Q13103 211 aa18.33■□□□□ 0.52
CLN3-228ENST00000567804 OS9Q13438 667 aaPredicted RBP18.33■□□□□ 0.52
CLN3-228ENST00000567804 RRP1BQ14684 758 aaKnown RBP18.33■□□□□ 0.52
CLN3-228ENST00000567804 CCDC158Q5M9N0 1113 aa18.33■□□□□ 0.52
CLN3-228ENST00000567804 NAA16Q6N069 864 aaPredicted RBP18.33■□□□□ 0.52
CLN3-228ENST00000567804 ZNF280CQ8ND82 737 aa18.33■□□□□ 0.52
CLN3-228ENST00000567804 NOL10Q9BSC4 688 aaKnown RBP18.33■□□□□ 0.52
CLN3-228ENST00000567804 TBC1D2Q9BYX2 928 aa18.33■□□□□ 0.52
CLN3-228ENST00000567804 C1orf115Q9H7X2 142 aa18.33■□□□□ 0.52
CLN3-228ENST00000567804 BIN2Q9UBW5 565 aaPredicted RBP18.33■□□□□ 0.52
CLN3-228ENST00000567804 HERC5Q9UII4 1024 aaKnown RBP18.33■□□□□ 0.52
CLN3-228ENST00000567804 PNMA3Q9UL41 463 aa18.33■□□□□ 0.52
CLN3-228ENST00000567804 PLXNB2O15031 1838 aa18.33■□□□□ 0.52
CLN3-228ENST00000567804 TNPO2O14787 897 aaKnown RBP18.32■□□□□ 0.52
CLN3-228ENST00000567804 ADCY3O60266 1144 aa18.32■□□□□ 0.52
CLN3-228ENST00000567804 CYP2E1P05181 493 aaPredicted RBP18.32■□□□□ 0.52
CLN3-228ENST00000567804 FLT3LGP49771 235 aa18.32■□□□□ 0.52
CLN3-228ENST00000567804 RNF208Q9H0X6 261 aa18.32■□□□□ 0.52
CLN3-228ENST00000567804 AATFQ9NY61 560 aaKnown RBP eCLIP18.32■□□□□ 0.52
CLN3-228ENST00000567804 SURF6O75683 361 aaKnown RBP18.31■□□□□ 0.52
CLN3-228ENST00000567804 BAG3O95817 575 aa18.31■□□□□ 0.52
CLN3-228ENST00000567804 PPP4CP60510 307 aa18.31■□□□□ 0.52
CLN3-228ENST00000567804 FAM110CQ1W6H9 321 aa18.31■□□□□ 0.52
CLN3-228ENST00000567804 UBE2Q1Q7Z7E8 422 aa18.31■□□□□ 0.52
CLN3-228ENST00000567804 ADGRA1Q86SQ6 560 aa18.31■□□□□ 0.52
CLN3-228ENST00000567804 ANKRD13CQ8N6S4 541 aa18.31■□□□□ 0.52
CLN3-228ENST00000567804 ZNF512BQ96KM6 892 aaPredicted RBP18.31■□□□□ 0.52
CLN3-228ENST00000567804 DHX36Q9H2U1 1008 aaKnown RBP18.31■□□□□ 0.52
CLN3-228ENST00000567804 PI4KBQ9UBF8 816 aa18.31■□□□□ 0.52
CLN3-228ENST00000567804 USP17L5A8MUK1 530 aa18.3■□□□□ 0.52
CLN3-228ENST00000567804 H0YGN5 161 aa18.3■□□□□ 0.52
CLN3-228ENST00000567804 ELNP15502 786 aa18.3■□□□□ 0.52
CLN3-228ENST00000567804 PLCG2P16885 1265 aa18.3■□□□□ 0.52
CLN3-228ENST00000567804 HMGCS2P54868 508 aa18.3■□□□□ 0.52
CLN3-228ENST00000567804 IRF5Q13568 498 aa18.3■□□□□ 0.52
CLN3-228ENST00000567804 SH3D19Q5HYK7 790 aa18.3■□□□□ 0.52
CLN3-228ENST00000567804 FTSJ3Q8IY81 847 aaKnown RBP18.3■□□□□ 0.52
CLN3-228ENST00000567804 PXYLP1Q8TE99 480 aa18.3■□□□□ 0.52
CLN3-228ENST00000567804 UNC93B1Q9H1C4 597 aa18.3■□□□□ 0.52
CLN3-228ENST00000567804 AS3MTQ9HBK9 375 aa18.3■□□□□ 0.52
CLN3-228ENST00000567804 COLQQ9Y215 455 aaPredicted RBP18.3■□□□□ 0.52
CLN3-228ENST00000567804 NOP58Q9Y2X3 529 aaKnown RBP18.3■□□□□ 0.52
CLN3-228ENST00000567804 ALPK3Q96L96 1907 aa18.29■□□□□ 0.52
CLN3-228ENST00000567804 FLT1P17948 1338 aa18.29■□□□□ 0.52
CLN3-228ENST00000567804 IGSF3O75054 1194 aa18.29■□□□□ 0.52
CLN3-228ENST00000567804 RLBP1P12271 317 aa18.29■□□□□ 0.52
CLN3-228ENST00000567804 HNRNPUQ00839 825 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLN3-228ENST00000567804 PABPC4Q13310 644 aaKnown RBP eCLIP18.29■□□□□ 0.52
CLN3-228ENST00000567804 MAPKAPK5Q8IW41 473 aa18.29■□□□□ 0.52
CLN3-228ENST00000567804 ITPRIPQ8IWB1 547 aa18.29■□□□□ 0.52
CLN3-228ENST00000567804 U2AF1L4Q8WU68 220 aaKnown RBP18.29■□□□□ 0.52
CLN3-228ENST00000567804 TGFBRAP1Q8WUH2 860 aa18.29■□□□□ 0.52
CLN3-228ENST00000567804 DNAJC18Q9H819 358 aa18.29■□□□□ 0.52
CLN3-228ENST00000567804 DBNLQ9UJU6 430 aaKnown RBP18.29■□□□□ 0.52
CLN3-228ENST00000567804 ZBTB7BO15156 539 aaPredicted RBP18.28■□□□□ 0.52
CLN3-228ENST00000567804 INHAP05111 366 aa18.28■□□□□ 0.52
CLN3-228ENST00000567804 ZAP70P43403 619 aa18.28■□□□□ 0.52
CLN3-228ENST00000567804 GCLCP48506 637 aaPredicted RBP18.28■□□□□ 0.52
CLN3-228ENST00000567804 FXR1P51114 621 aaKnown RBP eCLIP18.28■□□□□ 0.52
CLN3-228ENST00000567804 METTL16Q86W50 562 aaKnown RBP18.28■□□□□ 0.52
CLN3-228ENST00000567804 COA7Q96BR5 231 aa18.28■□□□□ 0.52
CLN3-228ENST00000567804 PIH1D3Q9NQM4 214 aaKnown RBP18.28■□□□□ 0.52
CLN3-228ENST00000567804 TLR7Q9NYK1 1049 aaKnown RBP18.28■□□□□ 0.52
CLN3-228ENST00000567804 TRIOBPQ9H2D6 2365 aa18.27■□□□□ 0.52
CLN3-228ENST00000567804 SGPL1O95470 568 aa18.27■□□□□ 0.52
CLN3-228ENST00000567804 ASNSP08243 561 aa18.27■□□□□ 0.52
CLN3-228ENST00000567804 DPF3Q92784 378 aa18.27■□□□□ 0.52
CLN3-228ENST00000567804 WDR18Q9BV38 432 aa18.27■□□□□ 0.52
CLN3-228ENST00000567804 ASCC2Q9H1I8 757 aaPredicted RBP18.27■□□□□ 0.52
CLN3-228ENST00000567804 NAV1Q8NEY1 1877 aa18.26■□□□□ 0.51
CLN3-228ENST00000567804 DDX60LQ5H9U9 1706 aaKnown RBP18.26■□□□□ 0.51
CLN3-228ENST00000567804 JAG1P78504 1218 aa18.26■□□□□ 0.51
CLN3-228ENST00000567804 FOXP4Q8IVH2 680 aaPredicted RBP18.26■□□□□ 0.51
CLN3-228ENST00000567804 EAF2Q96CJ1 260 aaPredicted RBP18.26■□□□□ 0.51
CLN3-228ENST00000567804 HTATIP2Q9BUP3 242 aa18.26■□□□□ 0.51
CLN3-228ENST00000567804 CCDC8Q9H0W5 538 aaPredicted RBP18.26■□□□□ 0.51
CLN3-228ENST00000567804 TAOK2Q9UL54 1235 aa18.26■□□□□ 0.51
CLN3-228ENST00000567804 PALD1Q9ULE6 856 aa18.26■□□□□ 0.51
CLN3-228ENST00000567804 FARP2O94887 1054 aaPredicted RBP18.25■□□□□ 0.51
CLN3-228ENST00000567804 BACE1P56817 501 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms