RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 SOCS4Q8WXH5 440 aa21.01■□□□□ 0.95
CLK3-217ENST00000566126 USP6NLQ92738 828 aa21.01■□□□□ 0.95
CLK3-217ENST00000566126 TWISTNBQ3B726 338 aaPredicted RBP21■□□□□ 0.95
CLK3-217ENST00000566126 ATXN2LQ8WWM7 1075 aaKnown RBP21■□□□□ 0.95
CLK3-217ENST00000566126 BADQ92934 168 aa21■□□□□ 0.95
CLK3-217ENST00000566126 RFX7Q2KHR2 1363 aa20.99■□□□□ 0.95
CLK3-217ENST00000566126 DDTLA6NHG4 134 aaPredicted RBP20.99■□□□□ 0.95
CLK3-217ENST00000566126 LRRC24Q50LG9 513 aa20.99■□□□□ 0.95
CLK3-217ENST00000566126 ASB2Q96Q27 587 aa20.99■□□□□ 0.95
CLK3-217ENST00000566126 GRM8O00222 908 aa20.98■□□□□ 0.95
CLK3-217ENST00000566126 ENTPD3O75355 529 aa20.98■□□□□ 0.95
CLK3-217ENST00000566126 PDE8BO95263 885 aa20.98■□□□□ 0.95
CLK3-217ENST00000566126 HMGCS2P54868 508 aa20.98■□□□□ 0.95
CLK3-217ENST00000566126 SPP2Q13103 211 aa20.98■□□□□ 0.95
CLK3-217ENST00000566126 UHRF1Q96T88 793 aaPredicted RBP20.98■□□□□ 0.95
CLK3-217ENST00000566126 IDI2Q9BXS1 227 aa20.98■□□□□ 0.95
CLK3-217ENST00000566126 ATAD5Q96QE3 1844 aa20.98■□□□□ 0.95
CLK3-217ENST00000566126 F6X3S4 739 aa20.97■□□□□ 0.95
CLK3-217ENST00000566126 PRDX5P30044 214 aa20.97■□□□□ 0.95
CLK3-217ENST00000566126 PABPC4Q13310 644 aaKnown RBP eCLIP20.97■□□□□ 0.95
CLK3-217ENST00000566126 METTL24Q5JXM2 366 aa20.97■□□□□ 0.95
CLK3-217ENST00000566126 WDR66Q8TBY9 1149 aa20.97■□□□□ 0.95
CLK3-217ENST00000566126 KAZALD1Q96I82 304 aa20.97■□□□□ 0.95
CLK3-217ENST00000566126 TXNRD2Q9NNW7 524 aa20.97■□□□□ 0.95
CLK3-217ENST00000566126 ATP11BQ9Y2G3 1177 aa20.97■□□□□ 0.95
CLK3-217ENST00000566126 MYH2Q9UKX2 1941 aa20.96■□□□□ 0.95
CLK3-217ENST00000566126 PIEZO1Q92508 2521 aa20.96■□□□□ 0.95
CLK3-217ENST00000566126 MORN1Q5T089 497 aa20.96■□□□□ 0.95
CLK3-217ENST00000566126 ZSCAN29Q8IWY8 852 aaPredicted RBP20.96■□□□□ 0.95
CLK3-217ENST00000566126 ARIH1Q9Y4X5 557 aaPredicted RBP20.96■□□□□ 0.95
CLK3-217ENST00000566126 ZNF280CQ8ND82 737 aa20.95■□□□□ 0.94
CLK3-217ENST00000566126 PRDM5Q9NQX1 630 aaPredicted RBP20.95■□□□□ 0.94
CLK3-217ENST00000566126 THEGQ9P2T0 379 aa20.95■□□□□ 0.94
CLK3-217ENST00000566126 KIF16BQ96L93 1317 aa20.95■□□□□ 0.94
CLK3-217ENST00000566126 MYBBP1AQ9BQG0 1328 aaKnown RBP20.95■□□□□ 0.94
CLK3-217ENST00000566126 DNM1LO00429 736 aa20.94■□□□□ 0.94
CLK3-217ENST00000566126 FGFR2P21802 821 aa20.94■□□□□ 0.94
CLK3-217ENST00000566126 RGS2P41220 211 aa20.94■□□□□ 0.94
CLK3-217ENST00000566126 PDE3AQ14432 1141 aa20.94■□□□□ 0.94
CLK3-217ENST00000566126 SH3RF1Q7Z6J0 888 aa20.94■□□□□ 0.94
CLK3-217ENST00000566126 PPM1EQ8WY54 764 aa20.94■□□□□ 0.94
CLK3-217ENST00000566126 LPAR1Q92633 364 aa20.94■□□□□ 0.94
CLK3-217ENST00000566126 SUCLG2Q96I99 432 aa20.94■□□□□ 0.94
CLK3-217ENST00000566126 DDX4Q9NQI0 724 aaKnown RBP20.94■□□□□ 0.94
CLK3-217ENST00000566126 CHD9Q3L8U1 2897 aa20.93■□□□□ 0.94
CLK3-217ENST00000566126 ZEB1P37275 1124 aaPredicted RBP20.93■□□□□ 0.94
CLK3-217ENST00000566126 SH3D19Q5HYK7 790 aa20.93■□□□□ 0.94
CLK3-217ENST00000566126 SLC39A5Q6ZMH5 540 aa20.93■□□□□ 0.94
CLK3-217ENST00000566126 GPRC5AQ8NFJ5 357 aa20.93■□□□□ 0.94
CLK3-217ENST00000566126 P2RX7Q99572 595 aaKnown RBP20.93■□□□□ 0.94
CLK3-217ENST00000566126 APBA2Q99767 749 aa20.93■□□□□ 0.94
CLK3-217ENST00000566126 C1QTNF1Q9BXJ1 281 aa20.93■□□□□ 0.94
CLK3-217ENST00000566126 PORCNQ9H237 461 aa20.93■□□□□ 0.94
CLK3-217ENST00000566126 PDLIM7Q9NR12 457 aa20.93■□□□□ 0.94
CLK3-217ENST00000566126 DDX20Q9UHI6 824 aaKnown RBP20.93■□□□□ 0.94
CLK3-217ENST00000566126 TCF20Q9UGU0 1960 aaKnown RBP20.93■□□□□ 0.94
CLK3-217ENST00000566126 MYO9BQ13459 2157 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 TRIM43BA6NCK2 446 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 FAM196BA6NMK8 535 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 DNAJB2P25686 324 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 MAPK4P31152 587 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 EPHB4P54760 987 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 Q3C1V9 767 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 POTEEQ6S8J3 1075 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 GPR142Q7Z601 462 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 TRIM43Q96BQ3 446 aaPredicted RBP20.92■□□□□ 0.94
CLK3-217ENST00000566126 RNPC3Q96LT9 517 aaKnown RBP20.92■□□□□ 0.94
CLK3-217ENST00000566126 FLRT1Q9NZU1 646 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 REV3LO60673 3130 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 XIRP2A4UGR9 3374 aa20.92■□□□□ 0.94
CLK3-217ENST00000566126 LDHBP07195 334 aaKnown RBP20.91■□□□□ 0.94
CLK3-217ENST00000566126 MRPS5P82675 430 aaKnown RBP20.91■□□□□ 0.94
CLK3-217ENST00000566126 ZNF576Q9H609 170 aa20.91■□□□□ 0.94
CLK3-217ENST00000566126 C9orf78Q9NZ63 289 aaPredicted RBP20.91■□□□□ 0.94
CLK3-217ENST00000566126 RBPJLQ9UBG7 517 aa20.91■□□□□ 0.94
CLK3-217ENST00000566126 TBC1D12O60347 775 aa20.9■□□□□ 0.94
CLK3-217ENST00000566126 IFIT1P09914 478 aaKnown RBP20.9■□□□□ 0.94
CLK3-217ENST00000566126 HERVK_113P62684 666 aa20.9■□□□□ 0.94
CLK3-217ENST00000566126 IRX3P78415 501 aaPredicted RBP20.9■□□□□ 0.94
CLK3-217ENST00000566126 SNX17Q15036 470 aa20.9■□□□□ 0.94
CLK3-217ENST00000566126 TRIM60Q495X7 471 aa20.9■□□□□ 0.94
CLK3-217ENST00000566126 OSBPL5Q9H0X9 879 aaPredicted RBP20.9■□□□□ 0.94
CLK3-217ENST00000566126 GAKO14976 1311 aa20.89■□□□□ 0.93
CLK3-217ENST00000566126 ITGB8P26012 769 aa20.89■□□□□ 0.93
CLK3-217ENST00000566126 RRP1BQ14684 758 aaKnown RBP20.89■□□□□ 0.93
CLK3-217ENST00000566126 PUM3Q15397 648 aaKnown RBP20.89■□□□□ 0.93
CLK3-217ENST00000566126 GJC2Q5T442 439 aaPredicted RBP20.89■□□□□ 0.93
CLK3-217ENST00000566126 PLEKHH3Q7Z736 793 aa20.89■□□□□ 0.93
CLK3-217ENST00000566126 NECAB3Q96P71 396 aaPredicted RBP20.89■□□□□ 0.93
CLK3-217ENST00000566126 TBC1D2Q9BYX2 928 aa20.89■□□□□ 0.93
CLK3-217ENST00000566126 MSCO60682 206 aa20.88■□□□□ 0.93
CLK3-217ENST00000566126 HOXA7P31268 230 aaPredicted RBP20.88■□□□□ 0.93
CLK3-217ENST00000566126 ERVK-9P63128 1117 aa20.88■□□□□ 0.93
CLK3-217ENST00000566126 ERVK-24P63145 666 aa20.88■□□□□ 0.93
CLK3-217ENST00000566126 MAP2K5Q13163 448 aa20.88■□□□□ 0.93
CLK3-217ENST00000566126 PICALMQ13492 652 aa20.88■□□□□ 0.93
CLK3-217ENST00000566126 AKNAD1Q5T1N1 836 aa20.88■□□□□ 0.93
CLK3-217ENST00000566126 UTYO14607 1347 aa20.87■□□□□ 0.93
CLK3-217ENST00000566126 CNGA1P29973 690 aa20.87■□□□□ 0.93
CLK3-217ENST00000566126 RABL6Q3YEC7 729 aaPredicted RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms