RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 SND1Q7KZF4 910 aaKnown RBP eCLIP8□□□□□ -1.13
CHD9-212ENST00000564641 SPRED2Q7Z698 418 aa8□□□□□ -1.13
CHD9-212ENST00000564641 TNKS2Q9H2K2 1166 aa8□□□□□ -1.13
CHD9-212ENST00000564641 CSADQ9Y600 493 aa8□□□□□ -1.13
CHD9-212ENST00000564641 SNCAIPQ9Y6H5 919 aa8□□□□□ -1.13
CHD9-212ENST00000564641 AK5Q9Y6K8 562 aa8□□□□□ -1.13
CHD9-212ENST00000564641 YBX3P16989 372 aaKnown RBP eCLIP7.99□□□□□ -1.13
CHD9-212ENST00000564641 AOC3Q16853 763 aa7.99□□□□□ -1.13
CHD9-212ENST00000564641 EAPPQ56P03 285 aaPredicted RBP7.99□□□□□ -1.13
CHD9-212ENST00000564641 TTBK2Q6IQ55 1244 aa7.99□□□□□ -1.13
CHD9-212ENST00000564641 CD8BP10966 210 aa7.98□□□□□ -1.13
CHD9-212ENST00000564641 RLBP1P12271 317 aa7.98□□□□□ -1.13
CHD9-212ENST00000564641 BNIP3Q12983 259 aa7.98□□□□□ -1.13
CHD9-212ENST00000564641 CCDC85BQ15834 202 aaPredicted RBP7.98□□□□□ -1.13
CHD9-212ENST00000564641 ZNF792Q3KQV3 632 aa7.98□□□□□ -1.13
CHD9-212ENST00000564641 LCE3BQ5TA77 95 aa7.98□□□□□ -1.13
CHD9-212ENST00000564641 RASIP1Q5U651 963 aa7.98□□□□□ -1.13
CHD9-212ENST00000564641 ANGEL2Q5VTE6 544 aaKnown RBP7.98□□□□□ -1.13
CHD9-212ENST00000564641 ZNF574Q6ZN55 896 aaPredicted RBP7.98□□□□□ -1.13
CHD9-212ENST00000564641 CYFIP1Q7L576 1253 aa7.98□□□□□ -1.13
CHD9-212ENST00000564641 WFDC3Q8IUB2 231 aa7.98□□□□□ -1.13
CHD9-212ENST00000564641 ASB11Q8WXH4 323 aa7.98□□□□□ -1.13
CHD9-212ENST00000564641 HEXIM2Q96MH2 286 aaKnown RBP7.98□□□□□ -1.13
CHD9-212ENST00000564641 MAPK8IP1Q9UQF2 711 aa7.98□□□□□ -1.13
CHD9-212ENST00000564641 TACC3Q9Y6A5 838 aa7.98□□□□□ -1.13
CHD9-212ENST00000564641 ANKRD33BA6NCL7 494 aa7.97□□□□□ -1.13
CHD9-212ENST00000564641 GNAT3A8MTJ3 354 aa7.97□□□□□ -1.13
CHD9-212ENST00000564641 CAP2P40123 477 aa7.97□□□□□ -1.13
CHD9-212ENST00000564641 DIEXFQ68CQ4 756 aaKnown RBP7.97□□□□□ -1.13
CHD9-212ENST00000564641 ARMCX6Q7L4S7 300 aa7.97□□□□□ -1.13
CHD9-212ENST00000564641 FAM214BQ7L5A3 538 aa7.97□□□□□ -1.13
CHD9-212ENST00000564641 ATG4DQ86TL0 474 aaPredicted RBP7.97□□□□□ -1.13
CHD9-212ENST00000564641 PRDM5Q9NQX1 630 aaPredicted RBP7.97□□□□□ -1.13
CHD9-212ENST00000564641 PRAMEF27A3QJZ7 478 aa7.96□□□□□ -1.14
CHD9-212ENST00000564641 PDIA4P13667 645 aaKnown RBP7.96□□□□□ -1.14
CHD9-212ENST00000564641 ITIH2P19823 946 aa7.96□□□□□ -1.14
CHD9-212ENST00000564641 CLCN7P51798 805 aa7.96□□□□□ -1.14
CHD9-212ENST00000564641 ZNF746Q6NUN9 644 aaPredicted RBP7.96□□□□□ -1.14
CHD9-212ENST00000564641 LRFN4Q6PJG9 635 aa7.96□□□□□ -1.14
CHD9-212ENST00000564641 KRTAP19-1Q8IUB9 90 aa7.96□□□□□ -1.14
CHD9-212ENST00000564641 MFSD2AQ8NA29 543 aa7.96□□□□□ -1.14
CHD9-212ENST00000564641 PI4K2BQ8TCG2 481 aa7.96□□□□□ -1.14
CHD9-212ENST00000564641 WNT10AQ9GZT5 417 aa7.96□□□□□ -1.14
CHD9-212ENST00000564641 PLAGL2Q9UPG8 496 aa7.96□□□□□ -1.14
CHD9-212ENST00000564641 INPP5AQ14642 412 aa7.95□□□□□ -1.14
CHD9-212ENST00000564641 SLC23A3Q6PIS1 610 aa7.95□□□□□ -1.14
CHD9-212ENST00000564641 KRTAP1-3Q8IUG1 177 aa7.95□□□□□ -1.14
CHD9-212ENST00000564641 GAL3ST3Q96A11 431 aa7.95□□□□□ -1.14
CHD9-212ENST00000564641 PLPPR2Q96GM1 343 aa7.95□□□□□ -1.14
CHD9-212ENST00000564641 DUSP9Q99956 384 aaKnown RBP7.95□□□□□ -1.14
CHD9-212ENST00000564641 FOXQ1Q9C009 403 aa7.95□□□□□ -1.14
CHD9-212ENST00000564641 U3KQE9 123 aa7.95□□□□□ -1.14
CHD9-212ENST00000564641 ITGAEP38570 1179 aa7.94□□□□□ -1.14
CHD9-212ENST00000564641 ETF1P62495 437 aaKnown RBP7.94□□□□□ -1.14
CHD9-212ENST00000564641 HID1Q8IV36 788 aa7.94□□□□□ -1.14
CHD9-212ENST00000564641 COX4I2Q96KJ9 171 aa7.94□□□□□ -1.14
CHD9-212ENST00000564641 RC3H2Q9HBD1 1191 aaKnown RBP7.94□□□□□ -1.14
CHD9-212ENST00000564641 PAPLNO95428 1278 aa7.93□□□□□ -1.14
CHD9-212ENST00000564641 EOMESO95936 686 aa7.93□□□□□ -1.14
CHD9-212ENST00000564641 PTPN11Q06124 597 aaPredicted RBP7.93□□□□□ -1.14
CHD9-212ENST00000564641 WIPI1Q5MNZ9 446 aaPredicted RBP7.93□□□□□ -1.14
CHD9-212ENST00000564641 AGMOQ6ZNB7 445 aa7.93□□□□□ -1.14
CHD9-212ENST00000564641 C22orf34Q6ZV56 151 aa7.93□□□□□ -1.14
CHD9-212ENST00000564641 AEBP1Q8IUX7 1158 aa7.93□□□□□ -1.14
CHD9-212ENST00000564641 SPACA3Q8IXA5 215 aa7.93□□□□□ -1.14
CHD9-212ENST00000564641 RNASE1P07998 156 aaKnown RBP7.92□□□□□ -1.14
CHD9-212ENST00000564641 ST13P50502 369 aaKnown RBP7.92□□□□□ -1.14
CHD9-212ENST00000564641 SLBPQ14493 270 aaKnown RBP eCLIP7.92□□□□□ -1.14
CHD9-212ENST00000564641 UBE3DQ7Z6J8 389 aa7.92□□□□□ -1.14
CHD9-212ENST00000564641 POU5F2Q8N7G0 328 aa7.92□□□□□ -1.14
CHD9-212ENST00000564641 NOC4LQ9BVI4 516 aaKnown RBP7.92□□□□□ -1.14
CHD9-212ENST00000564641 MIR1-1HGQ9H1L0 117 aa7.92□□□□□ -1.14
CHD9-212ENST00000564641 MBNL3Q9NUK0 354 aaKnown RBP7.92□□□□□ -1.14
CHD9-212ENST00000564641 SLITRK5O94991 958 aa7.91□□□□□ -1.14
CHD9-212ENST00000564641 LIG3P49916 1009 aa7.91□□□□□ -1.14
CHD9-212ENST00000564641 IKZF1Q13422 519 aa7.91□□□□□ -1.14
CHD9-212ENST00000564641 NKPD1Q17RQ9 610 aa7.91□□□□□ -1.14
CHD9-212ENST00000564641 OGFOD2Q6N063 350 aa7.91□□□□□ -1.14
CHD9-212ENST00000564641 LMCD1Q9NZU5 365 aa7.91□□□□□ -1.14
CHD9-212ENST00000564641 TPX2Q9ULW0 747 aaKnown RBP7.91□□□□□ -1.14
CHD9-212ENST00000564641 BTBD11A6QL63 1104 aa7.9□□□□□ -1.14
CHD9-212ENST00000564641 GFRA2O00451 464 aa7.9□□□□□ -1.14
CHD9-212ENST00000564641 CYP7A1P22680 504 aa7.9□□□□□ -1.14
CHD9-212ENST00000564641 DAB2P98082 770 aa7.9□□□□□ -1.14
CHD9-212ENST00000564641 XPCQ01831 940 aaPredicted RBP7.9□□□□□ -1.14
CHD9-212ENST00000564641 PDE4BQ07343 736 aa7.9□□□□□ -1.14
CHD9-212ENST00000564641 PSMD2Q13200 908 aa7.9□□□□□ -1.14
CHD9-212ENST00000564641 TAF1CQ15572 869 aaPredicted RBP7.9□□□□□ -1.14
CHD9-212ENST00000564641 SFRP5Q5T4F7 317 aa7.9□□□□□ -1.14
CHD9-212ENST00000564641 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.9□□□□□ -1.14
CHD9-212ENST00000564641 PARP2Q9UGN5 583 aa7.9□□□□□ -1.14
CHD9-212ENST00000564641 PITPNM2Q9BZ72 1349 aa7.89□□□□□ -1.15
CHD9-212ENST00000564641 FAM155AB1AL88 458 aaPredicted RBP7.89□□□□□ -1.15
CHD9-212ENST00000564641 CST3P01034 146 aaPredicted RBP7.89□□□□□ -1.15
CHD9-212ENST00000564641 ZNF865P0CJ78 1059 aaPredicted RBP7.89□□□□□ -1.15
CHD9-212ENST00000564641 ERCC3P19447 782 aa7.89□□□□□ -1.15
CHD9-212ENST00000564641 CD96P40200 585 aa7.89□□□□□ -1.15
CHD9-212ENST00000564641 TSNAXIP1Q2TAA8 658 aa7.89□□□□□ -1.15
CHD9-212ENST00000564641 MFSD4AQ8N468 514 aa7.89□□□□□ -1.15
CHD9-212ENST00000564641 MIPEPQ99797 713 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms