RNA–Protein interactions for RNA: ENST00000564172.1

GDE1-203, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene GDE1, Length 2,238 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-203ENST00000564172 NUCB2P80303 420 aa20.72■□□□□ 0.91
GDE1-203ENST00000564172 DHX37Q8IY37 1157 aaKnown RBP20.72■□□□□ 0.91
GDE1-203ENST00000564172 VPS33BQ9H267 617 aa20.72■□□□□ 0.91
GDE1-203ENST00000564172 SCNN1DP51172 638 aa20.71■□□□□ 0.91
GDE1-203ENST00000564172 PKP1Q13835 747 aa20.71■□□□□ 0.91
GDE1-203ENST00000564172 LARGE2Q8N3Y3 721 aa20.71■□□□□ 0.91
GDE1-203ENST00000564172 TOMM22Q9NS69 142 aa20.71■□□□□ 0.91
GDE1-203ENST00000564172 SMC3Q9UQE7 1217 aa20.71■□□□□ 0.91
GDE1-203ENST00000564172 FGRP09769 529 aa20.7■□□□□ 0.9
GDE1-203ENST00000564172 USP17L8P0C7I0 530 aa20.7■□□□□ 0.9
GDE1-203ENST00000564172 EVX2Q03828 476 aa20.7■□□□□ 0.9
GDE1-203ENST00000564172 RRP12Q5JTH9 1297 aaKnown RBP20.7■□□□□ 0.9
GDE1-203ENST00000564172 HHIPL2Q6UWX4 724 aa20.7■□□□□ 0.9
GDE1-203ENST00000564172 TEX11Q8IYF3 940 aa20.7■□□□□ 0.9
GDE1-203ENST00000564172 GTF3C6Q969F1 213 aa20.7■□□□□ 0.9
GDE1-203ENST00000564172 ZNF274Q96GC6 653 aaPredicted RBP20.7■□□□□ 0.9
GDE1-203ENST00000564172 RNF216Q9NWF9 866 aaPredicted RBP20.7■□□□□ 0.9
GDE1-203ENST00000564172 SASS6Q6UVJ0 657 aa20.7■□□□□ 0.9
GDE1-203ENST00000564172 KIAA0825Q8IV33 1275 aa20.7■□□□□ 0.9
GDE1-203ENST00000564172 TMEM87BQ96K49 555 aa20.7■□□□□ 0.9
GDE1-203ENST00000564172 PFKFB2O60825 505 aa20.69■□□□□ 0.9
GDE1-203ENST00000564172 CYP2D6P10635 497 aa20.69■□□□□ 0.9
GDE1-203ENST00000564172 PCP11498 1178 aaKnown RBP20.69■□□□□ 0.9
GDE1-203ENST00000564172 IGDCC4Q8TDY8 1250 aa20.69■□□□□ 0.9
GDE1-203ENST00000564172 TEKT1Q969V4 418 aa20.69■□□□□ 0.9
GDE1-203ENST00000564172 MRIQ9BWK5 157 aa20.69■□□□□ 0.9
GDE1-203ENST00000564172 ANGEL1Q9UNK9 670 aaKnown RBP20.69■□□□□ 0.9
GDE1-203ENST00000564172 PDIA3P30101 505 aaKnown RBP20.69■□□□□ 0.9
GDE1-203ENST00000564172 C12orf60Q5U649 245 aa20.69■□□□□ 0.9
GDE1-203ENST00000564172 MAPKAPK5Q8IW41 473 aa20.69■□□□□ 0.9
GDE1-203ENST00000564172 SH2B2O14492 632 aaPredicted RBP20.68■□□□□ 0.9
GDE1-203ENST00000564172 DTNBO60941 627 aa20.68■□□□□ 0.9
GDE1-203ENST00000564172 SCRN1Q12765 414 aa20.68■□□□□ 0.9
GDE1-203ENST00000564172 TNPO1Q92973 898 aaKnown RBP20.68■□□□□ 0.9
GDE1-203ENST00000564172 BCS1LQ9Y276 419 aa20.68■□□□□ 0.9
GDE1-203ENST00000564172 ESR2Q92731 530 aa20.68■□□□□ 0.9
GDE1-203ENST00000564172 BRCA1P38398 1863 aaKnown RBP20.67■□□□□ 0.9
GDE1-203ENST00000564172 GJB2P29033 226 aa20.67■□□□□ 0.9
GDE1-203ENST00000564172 IARSP41252 1262 aaKnown RBP20.67■□□□□ 0.9
GDE1-203ENST00000564172 CRKP46108 304 aa20.67■□□□□ 0.9
GDE1-203ENST00000564172 MMP14P50281 582 aa20.67■□□□□ 0.9
GDE1-203ENST00000564172 HDLBPQ00341 1268 aaKnown RBP20.67■□□□□ 0.9
GDE1-203ENST00000564172 APOBEC3HQ6NTF7 200 aaKnown RBP20.67■□□□□ 0.9
GDE1-203ENST00000564172 SPON1Q9HCB6 807 aa20.67■□□□□ 0.9
GDE1-203ENST00000564172 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.67■□□□□ 0.9
GDE1-203ENST00000564172 ZDHHC9Q9Y397 364 aa20.67■□□□□ 0.9
GDE1-203ENST00000564172 SLC3A2P08195 630 aaKnown RBP20.66■□□□□ 0.9
GDE1-203ENST00000564172 PTMSP20962 102 aa20.66■□□□□ 0.9
GDE1-203ENST00000564172 NOL7Q9UMY1 257 aaKnown RBP20.66■□□□□ 0.9
GDE1-203ENST00000564172 FLT1P17948 1338 aa20.66■□□□□ 0.9
GDE1-203ENST00000564172 KLF18A0A0U1RQI7 1052 aa20.66■□□□□ 0.9
GDE1-203ENST00000564172 IFIT3O14879 490 aaKnown RBP20.66■□□□□ 0.9
GDE1-203ENST00000564172 PRDM1O75626 825 aa20.66■□□□□ 0.9
GDE1-203ENST00000564172 CCT2P78371 535 aaKnown RBP20.66■□□□□ 0.9
GDE1-203ENST00000564172 SLC4A8Q2Y0W8 1093 aa20.66■□□□□ 0.9
GDE1-203ENST00000564172 TMEM67Q5HYA8 995 aa20.66■□□□□ 0.9
GDE1-203ENST00000564172 NLGN2Q8NFZ4 835 aa20.66■□□□□ 0.9
GDE1-203ENST00000564172 MTA3Q9BTC8 594 aa20.66■□□□□ 0.9
GDE1-203ENST00000564172 TAOK3Q9H2K8 898 aa20.66■□□□□ 0.9
GDE1-203ENST00000564172 COL4A5P29400 1685 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 ORC4O43929 436 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 LIFRP42702 1097 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 AMOTL1Q8IY63 956 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 ZDHHC15Q96MV8 337 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 LY9Q9HBG7 655 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 SENP2Q9HC62 589 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 NFKBIEO00221 500 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 SKOR2Q2VWA4 1001 aaPredicted RBP20.65■□□□□ 0.9
GDE1-203ENST00000564172 SGMS1Q86VZ5 419 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 ZKSCAN3Q9BRR0 538 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 USP40Q9NVE5 1235 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 SAP30BPQ9UHR5 308 aaKnown RBP20.65■□□□□ 0.9
GDE1-203ENST00000564172 ZNRF3Q9ULT6 936 aa20.65■□□□□ 0.9
GDE1-203ENST00000564172 ZNF646O15015 1829 aaPredicted RBP20.65■□□□□ 0.9
GDE1-203ENST00000564172 RAD17O75943 681 aa20.64■□□□□ 0.89
GDE1-203ENST00000564172 POLR3DP05423 398 aaPredicted RBP20.64■□□□□ 0.89
GDE1-203ENST00000564172 PLCD1P51178 756 aa20.64■□□□□ 0.89
GDE1-203ENST00000564172 PDE4BQ07343 736 aa20.64■□□□□ 0.89
GDE1-203ENST00000564172 CDC42EP5Q6NZY7 148 aa20.64■□□□□ 0.89
GDE1-203ENST00000564172 NIM1KQ8IY84 436 aa20.64■□□□□ 0.89
GDE1-203ENST00000564172 HPS5Q9UPZ3 1129 aa20.64■□□□□ 0.89
GDE1-203ENST00000564172 RANBP6O60518 1105 aaKnown RBP20.63■□□□□ 0.89
GDE1-203ENST00000564172 WDHD1O75717 1129 aaPredicted RBP20.63■□□□□ 0.89
GDE1-203ENST00000564172 BRD1O95696 1058 aa20.63■□□□□ 0.89
GDE1-203ENST00000564172 VIL1P09327 827 aaKnown RBP20.63■□□□□ 0.89
GDE1-203ENST00000564172 SART3Q15020 963 aaKnown RBP20.63■□□□□ 0.89
GDE1-203ENST00000564172 RSBN1LQ6PCB5 846 aaPredicted RBP20.63■□□□□ 0.89
GDE1-203ENST00000564172 NCOA5Q9HCD5 579 aaKnown RBP20.63■□□□□ 0.89
GDE1-203ENST00000564172 SERPINA10Q9UK55 444 aa20.63■□□□□ 0.89
GDE1-203ENST00000564172 PSMD14O00487 310 aa20.63■□□□□ 0.89
GDE1-203ENST00000564172 SYT1P21579 422 aa20.63■□□□□ 0.89
GDE1-203ENST00000564172 LLPHQ9BRT6 129 aaKnown RBP20.63■□□□□ 0.89
GDE1-203ENST00000564172 PCDHAC2Q9Y5I4 1007 aa20.63■□□□□ 0.89
GDE1-203ENST00000564172 ROBO3Q96MS0 1386 aa20.63■□□□□ 0.89
GDE1-203ENST00000564172 GOLGA8BA8MQT2 603 aa20.62■□□□□ 0.89
GDE1-203ENST00000564172 DYNLL2Q96FJ2 89 aa20.62■□□□□ 0.89
GDE1-203ENST00000564172 MYO3BQ8WXR4 1341 aa20.62■□□□□ 0.89
GDE1-203ENST00000564172 ERICH2A1L162 156 aa20.62■□□□□ 0.89
GDE1-203ENST00000564172 JAK2O60674 1132 aa20.62■□□□□ 0.89
GDE1-203ENST00000564172 CTDNEP1O95476 244 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms