RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 LARGE2Q8N3Y3 721 aa21.17■□□□□ 0.98
COMMD4-208ENST00000563220 POLR3DP05423 398 aaPredicted RBP21.16■□□□□ 0.98
COMMD4-208ENST00000563220 RXRAP19793 462 aa21.16■□□□□ 0.98
COMMD4-208ENST00000563220 PDE4BQ07343 736 aa21.16■□□□□ 0.98
COMMD4-208ENST00000563220 WTAPQ15007 396 aa21.16■□□□□ 0.98
COMMD4-208ENST00000563220 UBAC1Q9BSL1 405 aa21.16■□□□□ 0.98
COMMD4-208ENST00000563220 USP40Q9NVE5 1235 aa21.16■□□□□ 0.98
COMMD4-208ENST00000563220 PCDHAC2Q9Y5I4 1007 aa21.16■□□□□ 0.98
COMMD4-208ENST00000563220 DDX11L8A8MPP1 907 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 TNKSO95271 1327 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 PDCP20941 246 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 FAM47AQ5JRC9 791 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 CDC42EP5Q6NZY7 148 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 CHMP4CQ96CF2 233 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 ZSCAN10Q96SZ4 725 aaPredicted RBP21.15■□□□□ 0.98
COMMD4-208ENST00000563220 MYL10Q9BUA6 226 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 ERICH2A1L162 156 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 CCDC69A6NI79 296 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 ZBTB43O43298 467 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 WDHD1O75717 1129 aaPredicted RBP21.15■□□□□ 0.98
COMMD4-208ENST00000563220 ADD1P35611 737 aaKnown RBP21.15■□□□□ 0.98
COMMD4-208ENST00000563220 METAP2P50579 478 aaKnown RBP eCLIP21.15■□□□□ 0.98
COMMD4-208ENST00000563220 MCTP1Q6DN14 999 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 AMOTL1Q8IY63 956 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 ZDHHC15Q96MV8 337 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 VPS33BQ9H267 617 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 SLC12A7Q9Y666 1083 aa21.15■□□□□ 0.98
COMMD4-208ENST00000563220 ROBO3Q96MS0 1386 aa21.14■□□□□ 0.98
COMMD4-208ENST00000563220 VPS37CA5D8V6 355 aaPredicted RBP21.14■□□□□ 0.97
COMMD4-208ENST00000563220 F13A1P00488 732 aa21.14■□□□□ 0.97
COMMD4-208ENST00000563220 FDPSP14324 419 aaKnown RBP21.14■□□□□ 0.97
COMMD4-208ENST00000563220 CDC27P30260 824 aa21.14■□□□□ 0.97
COMMD4-208ENST00000563220 HMGN5P82970 282 aaKnown RBP21.14■□□□□ 0.97
COMMD4-208ENST00000563220 HDLBPQ00341 1268 aaKnown RBP21.14■□□□□ 0.97
COMMD4-208ENST00000563220 MICU3Q86XE3 530 aa21.14■□□□□ 0.97
COMMD4-208ENST00000563220 TMTC2Q8N394 836 aa21.14■□□□□ 0.97
COMMD4-208ENST00000563220 DDX4Q9NQI0 724 aaKnown RBP21.14■□□□□ 0.97
COMMD4-208ENST00000563220 FAM217BQ9NTX9 383 aaPredicted RBP21.14■□□□□ 0.97
COMMD4-208ENST00000563220 COL4A5P29400 1685 aa21.14■□□□□ 0.97
COMMD4-208ENST00000563220 DHX16O60231 1041 aaKnown RBP21.13■□□□□ 0.97
COMMD4-208ENST00000563220 PICALMQ13492 652 aa21.13■□□□□ 0.97
COMMD4-208ENST00000563220 FOXD4L6Q3SYB3 417 aaPredicted RBP21.13■□□□□ 0.97
COMMD4-208ENST00000563220 FOXD4L3Q6VB84 417 aaPredicted RBP21.13■□□□□ 0.97
COMMD4-208ENST00000563220 CCDC144CPQ8IYA2 1237 aa21.13■□□□□ 0.97
COMMD4-208ENST00000563220 ENAHQ8N8S7 591 aaPredicted RBP21.13■□□□□ 0.97
COMMD4-208ENST00000563220 FAM184AQ8NB25 1140 aa21.13■□□□□ 0.97
COMMD4-208ENST00000563220 SLC44A5Q8NCS7 719 aa21.13■□□□□ 0.97
COMMD4-208ENST00000563220 RAD17O75943 681 aa21.13■□□□□ 0.97
COMMD4-208ENST00000563220 PDIA4P13667 645 aaKnown RBP21.13■□□□□ 0.97
COMMD4-208ENST00000563220 CDC37L1Q7L3B6 337 aa21.13■□□□□ 0.97
COMMD4-208ENST00000563220 IQCA1Q86XH1 822 aa21.13■□□□□ 0.97
COMMD4-208ENST00000563220 NMT2O60551 498 aa21.12■□□□□ 0.97
COMMD4-208ENST00000563220 IARSP41252 1262 aaKnown RBP21.12■□□□□ 0.97
COMMD4-208ENST00000563220 ZNF646O15015 1829 aaPredicted RBP21.12■□□□□ 0.97
COMMD4-208ENST00000563220 LAMB1P07942 1786 aa21.12■□□□□ 0.97
COMMD4-208ENST00000563220 GOLGA8AA7E2F4 631 aa21.11■□□□□ 0.97
COMMD4-208ENST00000563220 CPLX1O14810 134 aa21.11■□□□□ 0.97
COMMD4-208ENST00000563220 VIL1P09327 827 aaKnown RBP21.11■□□□□ 0.97
COMMD4-208ENST00000563220 SYNE3Q6ZMZ3 975 aa21.11■□□□□ 0.97
COMMD4-208ENST00000563220 MKNK2Q9HBH9 465 aa21.11■□□□□ 0.97
COMMD4-208ENST00000563220 SERPINA10Q9UK55 444 aa21.11■□□□□ 0.97
COMMD4-208ENST00000563220 BCS1LQ9Y276 419 aa21.11■□□□□ 0.97
COMMD4-208ENST00000563220 TSPY2A6NKD2 308 aa21.11■□□□□ 0.97
COMMD4-208ENST00000563220 PSMD14O00487 310 aa21.11■□□□□ 0.97
COMMD4-208ENST00000563220 RBM5P52756 815 aaKnown RBP eCLIP21.11■□□□□ 0.97
COMMD4-208ENST00000563220 TFAP4Q01664 338 aa21.11■□□□□ 0.97
COMMD4-208ENST00000563220 GSE1Q14687 1217 aa21.11■□□□□ 0.97
COMMD4-208ENST00000563220 RSBN1LQ6PCB5 846 aaPredicted RBP21.11■□□□□ 0.97
COMMD4-208ENST00000563220 GOLGA6L22H0YM25 854 aa21.1■□□□□ 0.97
COMMD4-208ENST00000563220 NFKBIEO00221 500 aa21.1■□□□□ 0.97
COMMD4-208ENST00000563220 CDK8P49336 464 aa21.1■□□□□ 0.97
COMMD4-208ENST00000563220 NFIAQ12857 509 aa21.1■□□□□ 0.97
COMMD4-208ENST00000563220 NTRK3Q16288 839 aa21.1■□□□□ 0.97
COMMD4-208ENST00000563220 C16orf86Q6ZW13 317 aa21.1■□□□□ 0.97
COMMD4-208ENST00000563220 ZNF654Q8IZM8 581 aa21.1■□□□□ 0.97
COMMD4-208ENST00000563220 TAOK3Q9H2K8 898 aa21.1■□□□□ 0.97
COMMD4-208ENST00000563220 ZNRF3Q9ULT6 936 aa21.1■□□□□ 0.97
COMMD4-208ENST00000563220 CDK5RAP2Q96SN8 1893 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 IFIT1BQ5T764 474 aaKnown RBP21.09■□□□□ 0.97
COMMD4-208ENST00000563220 NIM1KQ8IY84 436 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 NLGN2Q8NFZ4 835 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 GMLQ99445 158 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 ADAMTSL1Q8N6G6 1762 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 NAV1Q8NEY1 1877 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 TRAK2O60296 914 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 RASA1P20936 1047 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 FERMT3Q86UX7 667 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 OSBPL5Q9H0X9 879 aaPredicted RBP21.09■□□□□ 0.97
COMMD4-208ENST00000563220 IL17RBQ9NRM6 502 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 LMBRD1Q9NUN5 540 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 ORC3Q9UBD5 711 aaPredicted RBP21.09■□□□□ 0.97
COMMD4-208ENST00000563220 NID2Q14112 1375 aa21.09■□□□□ 0.97
COMMD4-208ENST00000563220 FOSBP53539 338 aa21.08■□□□□ 0.97
COMMD4-208ENST00000563220 CACNB3P54284 484 aa21.08■□□□□ 0.97
COMMD4-208ENST00000563220 CFAP100Q494V2 611 aa21.08■□□□□ 0.97
COMMD4-208ENST00000563220 ZFPM1Q8IX07 1006 aa21.08■□□□□ 0.97
COMMD4-208ENST00000563220 ZNF444Q8N0Y2 327 aaPredicted RBP21.08■□□□□ 0.97
COMMD4-208ENST00000563220 ZBTB12Q9Y330 459 aaPredicted RBP21.08■□□□□ 0.97
COMMD4-208ENST00000563220 DDX60LQ5H9U9 1706 aaKnown RBP21.07■□□□□ 0.96
COMMD4-208ENST00000563220 NT5C2P49902 561 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms