RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CCDC73Q6ZRK6 1079 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 SYT17Q9BSW7 474 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 PLA2G12BQ9BX93 195 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 CCDC194A0A1B0GVG4 234 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 PTPDC1A2A3K4 754 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 SMIM22K7EJ46 135 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 TM4SF1P30408 202 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 CXCL9Q07325 125 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 NFIAQ12857 509 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 UBE3CQ15386 1083 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 ANGEL2Q5VTE6 544 aaKnown RBP6.32□□□□□ -1.4
VPS13C-209ENST00000560637 GADL1Q6ZQY3 521 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 KCTD1Q719H9 257 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 KRT26Q7Z3Y9 468 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 TMC4Q7Z404 712 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 AKT1S1Q96B36 256 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 STRBPQ96SI9 672 aaKnown RBP6.32□□□□□ -1.4
VPS13C-209ENST00000560637 SERPINB13Q9UIV8 391 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 ANGEL1Q9UNK9 670 aaKnown RBP6.32□□□□□ -1.4
VPS13C-209ENST00000560637 THSD7AQ9UPZ6 1657 aa6.32□□□□□ -1.4
VPS13C-209ENST00000560637 PHRF1Q9P1Y6 1649 aaKnown RBP6.32□□□□□ -1.4
VPS13C-209ENST00000560637 PPP1R12BO60237 982 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-209ENST00000560637 MARCKSP29966 332 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-209ENST00000560637 KIF5BP33176 963 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 ICA1Q05084 483 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 NBPF9Q3BBW0 867 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 ISM2Q6H9L7 571 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 SMCR8Q8TEV9 937 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-209ENST00000560637 TMEM39BQ9GZU3 492 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 LSG1Q9H089 658 aaKnown RBP6.31□□□□□ -1.4
VPS13C-209ENST00000560637 GGA3Q9NZ52 723 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 KCNJ14Q9UNX9 436 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 CSADQ9Y600 493 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 RGPD2P0DJD1 1756 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 AKAP12Q02952 1782 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 RGPD5Q99666 1765 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 GH2P01242 217 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 RPS6KB1P23443 525 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 CDK5RAP3Q96JB5 506 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 SPATA32Q96LK8 384 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 PLIN2Q99541 437 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 GJB4Q9NTQ9 266 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 DAGLAQ9Y4D2 1042 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 LIG1P18858 919 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 HSPA4P34932 840 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 TNFAIP1Q13829 316 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 RASA3Q14644 834 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 KIF4BQ2VIQ3 1234 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 MAP1SQ66K74 1059 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-209ENST00000560637 USP17L2Q6R6M4 530 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 GPKOWQ92917 476 aaPredicted RBP eCLIP6.31□□□□□ -1.4
VPS13C-209ENST00000560637 NSUN4Q96CB9 384 aaKnown RBP6.31□□□□□ -1.4
VPS13C-209ENST00000560637 TRIM44Q96DX7 344 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-209ENST00000560637 PRMT6Q96LA8 375 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-209ENST00000560637 WRNIP1Q96S55 665 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 NUP88Q99567 741 aaPredicted RBP6.31□□□□□ -1.4
VPS13C-209ENST00000560637 ZBTB21Q9ULJ3 1066 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 SAMM50Q9Y512 469 aa6.31□□□□□ -1.4
VPS13C-209ENST00000560637 SHTN1A0MZ66 631 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 KRT18P05783 430 aaKnown RBP6.3□□□□□ -1.4
VPS13C-209ENST00000560637 TPD52L1Q16890 204 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-209ENST00000560637 ABCB5Q2M3G0 1257 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 SLC10A5Q5PT55 438 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 JAKMIP3Q5VZ66 844 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 DLK2Q6UY11 383 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 USP48Q86UV5 1035 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 PNMA1Q8ND90 353 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 VPS54Q9P1Q0 977 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 ZSWIM5Q9P217 1185 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 WDR33Q9C0J8 1336 aaKnown RBP6.3□□□□□ -1.4
VPS13C-209ENST00000560637 STX6O43752 255 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 CFBP00751 764 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 PARP1P09874 1014 aaKnown RBP6.3□□□□□ -1.4
VPS13C-209ENST00000560637 UBXN2AP68543 259 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 KRT85P78386 507 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 PDE4CQ08493 712 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 ME3Q16798 604 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 TBC1D10CQ8IV04 446 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 OSBPL3Q9H4L5 887 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 DCP1AQ9NPI6 582 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-209ENST00000560637 SH2B1Q9NRF2 756 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-209ENST00000560637 BIN2Q9UBW5 565 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-209ENST00000560637 SEMA3EO15041 775 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 WDHD1O75717 1129 aaPredicted RBP6.3□□□□□ -1.4
VPS13C-209ENST00000560637 EPS15P42566 896 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 SEPT2Q15019 361 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 CSPP1Q1MSJ5 1256 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 ADGRA1Q86SQ6 560 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 MAP4K1Q92918 833 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 ANP32EQ9BTT0 268 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 TPCN1Q9ULQ1 816 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 AOX1Q06278 1338 aa6.3□□□□□ -1.4
VPS13C-209ENST00000560637 EP400Q96L91 3159 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 BECN2A8MW95 431 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 TMEM232C9JQI7 657 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 FLOT1O75955 427 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 PLCD1P51178 756 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 PKP1Q13835 747 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 STYK1Q6J9G0 422 aa6.29□□□□□ -1.4
VPS13C-209ENST00000560637 FBXO33Q7Z6M2 555 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms