RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.71□□□□□ -0.06
CSPG4P11-201ENST00000560634 ZFYVE9O95405 1425 aa14.71□□□□□ -0.06
CSPG4P11-201ENST00000560634 ZNF202O95125 648 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 IL2RBP14784 551 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 TTC38Q5R3I4 469 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 GKAP1Q5VSY0 366 aaPredicted RBP14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 BICC1Q9H694 974 aaKnown RBP14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 SGSM2O43147 1006 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 ITIH3Q06033 890 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 KRT25Q7Z3Z0 450 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 VCXQ9H320 206 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 GEN1Q17RS7 908 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 HHATQ5VTY9 493 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 VTI1AQ96AJ9 217 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 ASIC3Q9UHC3 531 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 TACC3Q9Y6A5 838 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 B4E1Z4 1266 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 GIPC1O14908 333 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 CEP104O60308 925 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 DDB1Q16531 1140 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 PHLDB2Q86SQ0 1253 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 VEZTQ9HBM0 779 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 ZBTB21Q9ULJ3 1066 aa14.7□□□□□ -0.06
CSPG4P11-201ENST00000560634 SH3BP5O60239 455 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 TAF12Q16514 161 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 NUF2Q9BZD4 464 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 CRCPO75575 148 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 RPS6KA1Q15418 735 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 CTTNBP2NLQ9P2B4 639 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 SNX14Q9Y5W7 946 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 V9GY48 417 aaPredicted RBP14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 CEBPAP49715 358 aaPredicted RBP14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 ELF2Q15723 593 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 CCDC38Q502W7 563 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 PPP1R21Q6ZMI0 780 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 PIK3AP1Q6ZUJ8 805 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 TEX11Q8IYF3 940 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 TBC1D31Q96DN5 1066 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 LZTS2Q9BRK4 669 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 BCAP29Q9UHQ4 241 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 TNNQ9UQP3 1299 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 MSH6P52701 1360 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 TNRQ92752 1358 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 SEC24BO95487 1268 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 PPP2R5EQ16537 467 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 PARP2Q9UGN5 583 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 RTCBQ9Y3I0 505 aaKnown RBP14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 BIVM-ERCC5R4GMW8 1640 aa14.69□□□□□ -0.06
CSPG4P11-201ENST00000560634 RASSF2P50749 326 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 TRPC3Q13507 836 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 NONOQ15233 471 aaKnown RBP eCLIP14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 PARP10Q53GL7 1025 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 LRWD1Q9UFC0 647 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 KCNG1Q9UIX4 513 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 ARHGEF35A5YM69 484 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 RASA3Q14644 834 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 TNNI3KQ59H18 835 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 PPP1R12CQ9BZL4 782 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 FPGT-TNNI3KV9GXZ4 949 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 BUB1BO60566 1050 aaPredicted RBP14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 CPA1P15085 419 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 BRD3Q15059 726 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 BCRP11274 1271 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 KLHL30Q0D2K2 578 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 HERC4Q5GLZ8 1057 aaPredicted RBP14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 TM6SF1Q9BZW5 370 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 PFDN4Q9NQP4 134 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 KDM2BQ8NHM5 1336 aa14.68□□□□□ -0.06
CSPG4P11-201ENST00000560634 CLNS1AP54105 237 aaKnown RBP14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 JDP2Q8WYK2 163 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 ARHGEF2Q92974 986 aaKnown RBP14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 I3L4J1 428 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 PUM3Q15397 648 aaKnown RBP14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 PNMA8AQ86V59 439 aaPredicted RBP14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 KBTBD3Q8NAB2 608 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 RAB17Q9H0T7 212 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 CCDC169A6NNP5 214 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 RNF40O75150 1001 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 ZNF131P52739 623 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 STRN3Q13033 797 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 MAP7Q14244 749 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 POSTNQ15063 836 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 ANKRD20A3Q5VUR7 823 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 PLBD2Q8NHP8 589 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 WWC3Q9ULE0 1092 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 CA8P35219 290 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 TXKP42681 527 aa14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 SND1Q7KZF4 910 aaKnown RBP eCLIP14.67□□□□□ -0.06
CSPG4P11-201ENST00000560634 SRGAP1Q7Z6B7 1085 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 RNMTO43148 476 aaKnown RBP14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 TIMM10P62072 90 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 PEX26Q7Z412 305 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 EYA1Q99502 592 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 DNM3Q9UQ16 869 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 KDM5BQ9UGL1 1544 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 CCNT1O60563 726 aaKnown RBP14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 CEP120Q8N960 986 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 SNX29Q8TEQ0 813 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 METTL22Q9BUU2 404 aaPredicted RBP14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 NPATQ14207 1427 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms