RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 PTPRAP18433 802 aa6.5□□□□□ -1.37
SPG11-208ENST00000558155 MAGEA10P43363 369 aaPredicted RBP6.5□□□□□ -1.37
SPG11-208ENST00000558155 GCLCP48506 637 aaPredicted RBP6.5□□□□□ -1.37
SPG11-208ENST00000558155 VASPP50552 380 aaPredicted RBP6.5□□□□□ -1.37
SPG11-208ENST00000558155 LRRC24Q50LG9 513 aa6.5□□□□□ -1.37
SPG11-208ENST00000558155 FAM109BQ6ICB4 259 aaPredicted RBP6.5□□□□□ -1.37
SPG11-208ENST00000558155 SLC4A10Q6U841 1118 aa6.5□□□□□ -1.37
SPG11-208ENST00000558155 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.5□□□□□ -1.37
SPG11-208ENST00000558155 ZSCAN29Q8IWY8 852 aaPredicted RBP6.5□□□□□ -1.37
SPG11-208ENST00000558155 ANKRD13CQ8N6S4 541 aa6.5□□□□□ -1.37
SPG11-208ENST00000558155 DIS3LQ8TF46 1054 aaKnown RBP6.5□□□□□ -1.37
SPG11-208ENST00000558155 PRKRIP1Q9H875 184 aaPredicted RBP6.5□□□□□ -1.37
SPG11-208ENST00000558155 GNL3LQ9NVN8 582 aaKnown RBP6.5□□□□□ -1.37
SPG11-208ENST00000558155 PNMA3Q9UL41 463 aa6.5□□□□□ -1.37
SPG11-208ENST00000558155 KIF16BQ96L93 1317 aa6.5□□□□□ -1.37
SPG11-208ENST00000558155 ENTPD3O75355 529 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 LDHBP07195 334 aaKnown RBP6.49□□□□□ -1.37
SPG11-208ENST00000558155 SLC5A1P13866 664 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 HOXB1P14653 301 aaPredicted RBP6.49□□□□□ -1.37
SPG11-208ENST00000558155 MAP3K10Q02779 954 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 NFIAQ12857 509 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 PABPC4Q13310 644 aaKnown RBP eCLIP6.49□□□□□ -1.37
SPG11-208ENST00000558155 PUM3Q15397 648 aaKnown RBP6.49□□□□□ -1.37
SPG11-208ENST00000558155 FAM110CQ1W6H9 321 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 ZFPM1Q8IX07 1006 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 SUCLG2Q96I99 432 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 FAM198AQ9UFP1 575 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 GJD2Q9UKL4 321 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 OGDHLQ9ULD0 1010 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 AGTPBP1Q9UPW5 1226 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 BOLA1Q9Y3E2 137 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 DAGLAQ9Y4D2 1042 aa6.49□□□□□ -1.37
SPG11-208ENST00000558155 MKI67P46013 3256 aaKnown RBP6.49□□□□□ -1.37
SPG11-208ENST00000558155 ALPK3Q96L96 1907 aa6.48□□□□□ -1.37
SPG11-208ENST00000558155 TRIM75PA6NK02 468 aa6.48□□□□□ -1.37
SPG11-208ENST00000558155 NBPF7P0C2Y1 421 aaPredicted RBP6.48□□□□□ -1.37
SPG11-208ENST00000558155 FGFR2P21802 821 aa6.48□□□□□ -1.37
SPG11-208ENST00000558155 EXOSC9Q06265 439 aaKnown RBP6.48□□□□□ -1.37
SPG11-208ENST00000558155 PDAP1Q13442 181 aaKnown RBP6.48□□□□□ -1.37
SPG11-208ENST00000558155 DIXDC1Q155Q3 683 aa6.48□□□□□ -1.37
SPG11-208ENST00000558155 WDR63Q8IWG1 891 aa6.48□□□□□ -1.37
SPG11-208ENST00000558155 SLF2Q8IX21 1173 aa6.48□□□□□ -1.37
SPG11-208ENST00000558155 TRMT44Q8IYL2 757 aaKnown RBP6.48□□□□□ -1.37
SPG11-208ENST00000558155 ZGPATQ8N5A5 531 aaKnown RBP6.48□□□□□ -1.37
SPG11-208ENST00000558155 VGLL2Q8N8G2 317 aa6.48□□□□□ -1.37
SPG11-208ENST00000558155 PROCA1Q8NCQ7 364 aaPredicted RBP6.48□□□□□ -1.37
SPG11-208ENST00000558155 LPIN2Q92539 896 aa6.48□□□□□ -1.37
SPG11-208ENST00000558155 KAZALD1Q96I82 304 aa6.48□□□□□ -1.37
SPG11-208ENST00000558155 IDI2Q9BXS1 227 aa6.48□□□□□ -1.37
SPG11-208ENST00000558155 TBC1D2Q9BYX2 928 aa6.48□□□□□ -1.37
SPG11-208ENST00000558155 BICC1Q9H694 974 aaKnown RBP6.48□□□□□ -1.37
SPG11-208ENST00000558155 TBC1D12O60347 775 aa6.47□□□□□ -1.37
SPG11-208ENST00000558155 XRCC5P13010 732 aaKnown RBP6.47□□□□□ -1.37
SPG11-208ENST00000558155 CYP2B6P20813 491 aa6.47□□□□□ -1.37
SPG11-208ENST00000558155 RGS3P49796 1198 aa6.47□□□□□ -1.37
SPG11-208ENST00000558155 RABL6Q3YEC7 729 aaPredicted RBP6.47□□□□□ -1.37
SPG11-208ENST00000558155 LBHD1Q9BQE6 289 aaPredicted RBP6.47□□□□□ -1.37
SPG11-208ENST00000558155 NUDT12Q9BQG2 462 aa6.47□□□□□ -1.37
SPG11-208ENST00000558155 FBXO3Q9UK99 471 aa6.47□□□□□ -1.37
SPG11-208ENST00000558155 DENND2AQ9ULE3 1009 aa6.47□□□□□ -1.37
SPG11-208ENST00000558155 UTYO14607 1347 aa6.47□□□□□ -1.37
SPG11-208ENST00000558155 FANCIQ9NVI1 1328 aa6.47□□□□□ -1.37
SPG11-208ENST00000558155 DDTLA6NHG4 134 aaPredicted RBP6.46□□□□□ -1.38
SPG11-208ENST00000558155 EYA2O00167 538 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 SEMA3EO15041 775 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 PRDX5P30044 214 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 MDM2Q00987 491 aaPredicted RBP6.46□□□□□ -1.38
SPG11-208ENST00000558155 TRIM32Q13049 653 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 SPP2Q13103 211 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 TREML2Q5T2D2 321 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 ZNF697Q5TEC3 545 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 SPTY2D1Q68D10 685 aaPredicted RBP6.46□□□□□ -1.38
SPG11-208ENST00000558155 CCAR1Q8IX12 1150 aaKnown RBP6.46□□□□□ -1.38
SPG11-208ENST00000558155 ZNF280CQ8ND82 737 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 KLHDC4Q8TBB5 520 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 SYMPKQ92797 1274 aaKnown RBP6.46□□□□□ -1.38
SPG11-208ENST00000558155 OSBPL5Q9H0X9 879 aaPredicted RBP6.46□□□□□ -1.38
SPG11-208ENST00000558155 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.46□□□□□ -1.38
SPG11-208ENST00000558155 PRDM6Q9NQX0 595 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 CEP126Q9P2H0 1117 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 PRKAG2Q9UGJ0 569 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 SALL1Q9NSC2 1324 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 SZT2Q5T011 3432 aa6.46□□□□□ -1.38
SPG11-208ENST00000558155 HTTP42858 3142 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 CENPFP49454 3210 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 MYH2Q9UKX2 1941 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 USP17L5A8MUK1 530 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 LDHCP07864 332 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 COL6A1P12109 1028 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 PICALMQ13492 652 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 PDE3AQ14432 1141 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 SH3D19Q5HYK7 790 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 MAP3K21Q5TCX8 1036 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 TMEM92Q6UXU6 159 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 SH3BP5LQ7L8J4 393 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 ANKRD44Q8N8A2 993 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 GPRC5AQ8NFJ5 357 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 TRIB2Q92519 343 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 FAM161BQ96MY7 647 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 GUCD1Q96NT3 240 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms