RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 TRIM34Q9BYJ4 488 aa11.57□□□□□ -0.56
TMEM260-213ENST00000556929 DEFB129Q9H1M3 183 aa11.57□□□□□ -0.56
TMEM260-213ENST00000556929 SAP30BPQ9UHR5 308 aaKnown RBP11.57□□□□□ -0.56
TMEM260-213ENST00000556929 PALD1Q9ULE6 856 aa11.57□□□□□ -0.56
TMEM260-213ENST00000556929 SIPA1L1O43166 1804 aa11.57□□□□□ -0.56
TMEM260-213ENST00000556929 ATRNL1Q5VV63 1379 aa11.56□□□□□ -0.56
TMEM260-213ENST00000556929 CD44P16070 742 aaKnown RBP11.56□□□□□ -0.56
TMEM260-213ENST00000556929 ZKSCAN1P17029 563 aaPredicted RBP11.56□□□□□ -0.56
TMEM260-213ENST00000556929 HSPA4P34932 840 aa11.56□□□□□ -0.56
TMEM260-213ENST00000556929 PPARAQ07869 468 aa11.56□□□□□ -0.56
TMEM260-213ENST00000556929 NECTIN1Q15223 517 aa11.56□□□□□ -0.56
TMEM260-213ENST00000556929 C12orf60Q5U649 245 aa11.56□□□□□ -0.56
TMEM260-213ENST00000556929 FOXP4Q8IVH2 680 aaPredicted RBP11.56□□□□□ -0.56
TMEM260-213ENST00000556929 TMEM39BQ9GZU3 492 aa11.56□□□□□ -0.56
TMEM260-213ENST00000556929 PI4KBQ9UBF8 816 aa11.56□□□□□ -0.56
TMEM260-213ENST00000556929 ANAPC4Q9UJX5 808 aa11.56□□□□□ -0.56
TMEM260-213ENST00000556929 TAOK2Q9UL54 1235 aa11.56□□□□□ -0.56
TMEM260-213ENST00000556929 DDTLA6NHG4 134 aaPredicted RBP11.55□□□□□ -0.56
TMEM260-213ENST00000556929 SLC27A2O14975 620 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 PDE4BQ07343 736 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 SLC4A8Q2Y0W8 1093 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 SUPT20HL1Q3ZLR7 823 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 CREB3L3Q68CJ9 461 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 KRT26Q7Z3Y9 468 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 ZFPM1Q8IX07 1006 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 CRACR2BQ8N4Y2 399 aaPredicted RBP11.55□□□□□ -0.56
TMEM260-213ENST00000556929 CSRNP1Q96S65 589 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 C22orf23Q9BZE7 217 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 EHD4Q9H223 541 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 RNF41Q9H4P4 317 aaPredicted RBP11.55□□□□□ -0.56
TMEM260-213ENST00000556929 ZNF287Q9HBT7 754 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 TRPM7Q96QT4 1865 aa11.55□□□□□ -0.56
TMEM260-213ENST00000556929 ATAD5Q96QE3 1844 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 CYP2D7A0A087X1C5 515 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 CYP21A2P08686 494 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 CYP2D6P10635 497 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 PCP11498 1178 aaKnown RBP11.54□□□□□ -0.56
TMEM260-213ENST00000556929 NF2P35240 595 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 PLCD1P51178 756 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 HAND2P61296 217 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 CTDSPL2Q05D32 466 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 TRDNQ13061 729 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 KRT32Q14532 448 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 MFSD6Q6ZSS7 791 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 SH3BP5LQ7L8J4 393 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 USP48Q86UV5 1035 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 SWAP70Q9UH65 585 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 HERC5Q9UII4 1024 aaKnown RBP11.54□□□□□ -0.56
TMEM260-213ENST00000556929 SERPINB13Q9UIV8 391 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 SCAF8Q9UPN6 1271 aaKnown RBP11.54□□□□□ -0.56
TMEM260-213ENST00000556929 ROBO3Q96MS0 1386 aa11.54□□□□□ -0.56
TMEM260-213ENST00000556929 ADM5C9JUS6 153 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 TBC1D12O60347 775 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 POTEIP0CG38 1075 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 POTEJP0CG39 1038 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 NT5C2P49902 561 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 ANAPC15P60006 121 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 AKNAD1Q5T1N1 836 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 DCAF15Q66K64 600 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 MAP1SQ66K74 1059 aaPredicted RBP11.53□□□□□ -0.56
TMEM260-213ENST00000556929 STK11IPQ8N1F8 1099 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 STAG1Q8WVM7 1258 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 TEPSINQ96N21 525 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 GLIS2Q9BZE0 524 aaPredicted RBP11.53□□□□□ -0.56
TMEM260-213ENST00000556929 CNNM2Q9H8M5 875 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.53□□□□□ -0.56
TMEM260-213ENST00000556929 MKNK2Q9HBH9 465 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 TOMM22Q9NS69 142 aa11.53□□□□□ -0.56
TMEM260-213ENST00000556929 E7EWF7 191 aa11.52□□□□□ -0.57
TMEM260-213ENST00000556929 PSMA5P28066 241 aa11.52□□□□□ -0.57
TMEM260-213ENST00000556929 CDK8P49336 464 aa11.52□□□□□ -0.57
TMEM260-213ENST00000556929 RBM25P49756 843 aaKnown RBP11.52□□□□□ -0.57
TMEM260-213ENST00000556929 TSGA10IPQ3SY00 556 aa11.52□□□□□ -0.57
TMEM260-213ENST00000556929 NBPF12Q5TAG4 269 aaPredicted RBP11.52□□□□□ -0.57
TMEM260-213ENST00000556929 C16orf86Q6ZW13 317 aa11.52□□□□□ -0.57
TMEM260-213ENST00000556929 RALYLQ86SE5 291 aaKnown RBP11.52□□□□□ -0.57
TMEM260-213ENST00000556929 METTL16Q86W50 562 aaKnown RBP11.52□□□□□ -0.57
TMEM260-213ENST00000556929 ZNF444Q8N0Y2 327 aaPredicted RBP11.52□□□□□ -0.57
TMEM260-213ENST00000556929 NCOA7Q8NI08 942 aa11.52□□□□□ -0.57
TMEM260-213ENST00000556929 KCNB2Q92953 911 aa11.52□□□□□ -0.57
TMEM260-213ENST00000556929 CDCA5Q96FF9 252 aa11.52□□□□□ -0.57
TMEM260-213ENST00000556929 DYNLL2Q96FJ2 89 aa11.52□□□□□ -0.57
TMEM260-213ENST00000556929 KRT23Q9C075 422 aa11.52□□□□□ -0.57
TMEM260-213ENST00000556929 SNX14Q9Y5W7 946 aa11.52□□□□□ -0.57
TMEM260-213ENST00000556929 KIF3CO14782 793 aa11.51□□□□□ -0.57
TMEM260-213ENST00000556929 PPP1R12BO60237 982 aaPredicted RBP11.51□□□□□ -0.57
TMEM260-213ENST00000556929 FGRP09769 529 aa11.51□□□□□ -0.57
TMEM260-213ENST00000556929 MAP3K10Q02779 954 aa11.51□□□□□ -0.57
TMEM260-213ENST00000556929 GABPAQ06546 454 aa11.51□□□□□ -0.57
TMEM260-213ENST00000556929 RRP12Q5JTH9 1297 aaKnown RBP11.51□□□□□ -0.57
TMEM260-213ENST00000556929 PRAMEF18Q5VWM3 479 aa11.51□□□□□ -0.57
TMEM260-213ENST00000556929 ESR2Q92731 530 aa11.51□□□□□ -0.57
TMEM260-213ENST00000556929 NEK1Q96PY6 1258 aa11.51□□□□□ -0.57
TMEM260-213ENST00000556929 ZNF341Q9BYN7 854 aa11.51□□□□□ -0.57
TMEM260-213ENST00000556929 DOCK1Q14185 1865 aa11.51□□□□□ -0.57
TMEM260-213ENST00000556929 ORC4O43929 436 aa11.5□□□□□ -0.57
TMEM260-213ENST00000556929 TOMM70O94826 608 aa11.5□□□□□ -0.57
TMEM260-213ENST00000556929 HMGB1P09429 215 aaKnown RBP11.5□□□□□ -0.57
TMEM260-213ENST00000556929 TATDN1Q6P1N9 297 aa11.5□□□□□ -0.57
TMEM260-213ENST00000556929 MIGA2Q7L4E1 593 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms